HL_4V8Z_014

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Z_014 not in the Motif Atlas

Homologous match to HL_4V88_199

Geometric discrepancy: 0.0642

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4V8Z|1|B2|A|520
4V8Z|1|B2|A|521
4V8Z|1|B2|U|522
4V8Z|1|B2|G|523
4V8Z|1|B2|U|524
4V8Z|1|B2|A|525
4V8Z|1|B2|A|526
4V8Z|1|B2|A|527
4V8Z|1|B2|U|528
4V8Z|1|B2|A|529
4V8Z|1|B2|C|530
4V8Z|1|B2|C|531
4V8Z|1|B2|U|532

Current chains

Chain B2

18S RIBOSOMAL RNA

Nearby chains

Chain AE

40S RIBOSOMAL PROTEIN S4-A

Chain AJ

40S RIBOSOMAL PROTEIN S9-A

Chain AY

40S RIBOSOMAL PROTEIN S24-A