HL_4V8Z_016

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

GCUAACCUUGAGUCCUUGUGGCUCUUGGCGAAC

Length

33 nucleotides

Bulged bases

4V8Z|1|B2|U|718, 4V8Z|1|B2|U|719, 4V8Z|1|B2|U|721

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8Z|1|B2|G|703
4V8Z|1|B2|C|704
4V8Z|1|B2|U|705
4V8Z|1|B2|A|706
4V8Z|1|B2|A|707
4V8Z|1|B2|C|708
4V8Z|1|B2|C|709
4V8Z|1|B2|U|710
4V8Z|1|B2|U|711
4V8Z|1|B2|G|712
4V8Z|1|B2|A|713
4V8Z|1|B2|G|714
4V8Z|1|B2|U|715
4V8Z|1|B2|C|716
4V8Z|1|B2|C|717
4V8Z|1|B2|U|718
4V8Z|1|B2|U|719
4V8Z|1|B2|G|720
4V8Z|1|B2|U|721
4V8Z|1|B2|G|722
4V8Z|1|B2|G|723
4V8Z|1|B2|C|724
4V8Z|1|B2|U|725
4V8Z|1|B2|C|726
4V8Z|1|B2|U|727
4V8Z|1|B2|U|728
4V8Z|1|B2|G|729
4V8Z|1|B2|G|730
4V8Z|1|B2|C|731
4V8Z|1|B2|G|732
4V8Z|1|B2|A|733
4V8Z|1|B2|A|734
4V8Z|1|B2|C|735

Current chains

Chain B2

18S RIBOSOMAL RNA

Nearby chains

Chain AE

40S RIBOSOMAL PROTEIN S4-A