HL_4V8Z_035

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

GAGANNNNNNNNNNNNNNUCUC

Length

22 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8Z|1|B2|G|1690
4V8Z|1|B2|A|1691
4V8Z|1|B2|G|1692
4V8Z|1|B2|A|1693
4V8Z|1|B2|N|1694
4V8Z|1|B2|N|1695
4V8Z|1|B2|N|1696
4V8Z|1|B2|N|1697
4V8Z|1|B2|N|1698
4V8Z|1|B2|N|1699
4V8Z|1|B2|N|1700
4V8Z|1|B2|N|1701
4V8Z|1|B2|N|1702
4V8Z|1|B2|N|1703
4V8Z|1|B2|N|1704
4V8Z|1|B2|N|1705
4V8Z|1|B2|N|1706
4V8Z|1|B2|N|1707
4V8Z|1|B2|U|1708
4V8Z|1|B2|C|1709
4V8Z|1|B2|U|1710
4V8Z|1|B2|C|1711

Current chains

Chain B2

18S RIBOSOMAL RNA

Nearby chains

Chain AG

40S RIBOSOMAL PROTEIN S6-A

Chain BW

60S RIBOSOMAL PROTEIN L24-A