HL_4V8Z_045
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- GGUAAAUUCC
- Length
- 10 nucleotides
- Bulged bases
- 4V8Z|1|B5|G|304, 4V8Z|1|B5|U|305
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8Z_045 not in the Motif Atlas
- Homologous match to HL_5TBW_009
- Geometric discrepancy: 0.0602
- The information below is about HL_5TBW_009
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_15076.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
4V8Z|1|B5|G|303
4V8Z|1|B5|G|304
4V8Z|1|B5|U|305
4V8Z|1|B5|A|306
4V8Z|1|B5|A|307
4V8Z|1|B5|A|308
4V8Z|1|B5|U|309
4V8Z|1|B5|U|310
4V8Z|1|B5|C|311
4V8Z|1|B5|C|312
Current chains
- Chain B5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain BL
- 60S RIBOSOMAL PROTEIN L13-A
- Chain BN
- 60S RIBOSOMAL PROTEIN L15-A
- Chain Ba
- 60S RIBOSOMAL PROTEIN L28
- Chain Bi
- 60S RIBOSOMAL PROTEIN L36-A
- Chain Bo
- 60S RIBOSOMAL PROTEIN L42-A
Coloring options: