HL_4V8Z_052

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Z_052 not in the Motif Atlas

Homologous match to HL_8C3A_016

Geometric discrepancy: 0.0689

The information below is about HL_8C3A_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V8Z|1|B5|U|707
4V8Z|1|B5|G|708
4V8Z|1|B5|A|709
4V8Z|1|B5|A|710
4V8Z|1|B5|A|711
4V8Z|1|B5|G|712

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain BL

60S RIBOSOMAL PROTEIN L13-A

Chain BQ

60S RIBOSOMAL PROTEIN L18-A

Chain Ba

60S RIBOSOMAL PROTEIN L28

Chain Bi

60S RIBOSOMAL PROTEIN L36-A