HL_4V8Z_059

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

CGAAAUG

Length

7 nucleotides

Bulged bases

4V8Z|1|B5|A|1025, 4V8Z|1|B5|U|1028

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8Z|1|B5|C|1023
4V8Z|1|B5|G|1024
4V8Z|1|B5|A|1025
4V8Z|1|B5|A|1026
4V8Z|1|B5|A|1027
4V8Z|1|B5|U|1028
4V8Z|1|B5|G|1029

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain A5

UBIQUITIN-40S RIBOSOMAL PROTEIN S31

Chain A7

SUPPRESSOR PROTEIN STM1

Chain AP

40S RIBOSOMAL PROTEIN S15

Chain B2

Small subunit ribosomal RNA; SSU rRNA

Chain BJ

60S RIBOSOMAL PROTEIN L11-A