HL_4V8Z_063

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Z_063 not in the Motif Atlas

Geometric match to HL_5J7L_151

Geometric discrepancy: 0.3107

The information below is about HL_5J7L_151

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

3

Unit IDs

4V8Z|1|B5|C|1239
4V8Z|1|B5|A|1240
4V8Z|1|B5|U|1241
4V8Z|1|B5|G|1242
4V8Z|1|B5|G|1243
4V8Z|1|B5|A|1244
4V8Z|1|B5|A|1245
4V8Z|1|B5|G|1246
4V8Z|1|B5|U|1247
4V8Z|1|B5|C|1248
4V8Z|1|B5|G|1249

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain BK

60S RIBOSOMAL PROTEIN L11-A