HL_4V8Z_064

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

GAGUGUGUAACAACUC

Length

16 nucleotides

Bulged bases

4V8Z|1|B5|A|1263

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8Z|1|B5|G|1262
4V8Z|1|B5|A|1263
4V8Z|1|B5|G|1264
4V8Z|1|B5|U|1265
4V8Z|1|B5|G|1266
4V8Z|1|B5|U|1267
4V8Z|1|B5|G|1268
4V8Z|1|B5|U|1269
4V8Z|1|B5|A|1270
4V8Z|1|B5|A|1271
4V8Z|1|B5|C|1272
4V8Z|1|B5|A|1273
4V8Z|1|B5|A|1274
4V8Z|1|B5|C|1275
4V8Z|1|B5|U|1276
4V8Z|1|B5|C|1277

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain Bm

UBIQUITIN-60S RIBOSOMAL PROTEIN L40

Chain Bq

60S ACIDIC RIBOSOMAL PROTEIN P0

Chain CV

EUKARYOTIC TRANSLATION INITIATION FACTOR 5B, PROBABLE TRANSLATION INITIATION FACTOR IF-2