HL_4V8Z_070

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

CCUGAUUUUAUGCAGG

Length

16 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8Z|1|B5|C|1562
4V8Z|1|B5|C|1563
4V8Z|1|B5|U|1564
4V8Z|1|B5|G|1565
4V8Z|1|B5|A|1566
4V8Z|1|B5|U|1567
4V8Z|1|B5|U|1568
4V8Z|1|B5|U|1569
4V8Z|1|B5|U|1570
4V8Z|1|B5|A|1571
4V8Z|1|B5|U|1572
4V8Z|1|B5|G|1573
4V8Z|1|B5|C|1574
4V8Z|1|B5|A|1575
4V8Z|1|B5|G|1576
4V8Z|1|B5|G|1577

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain B8

5.8S ribosomal RNA; 5.8S rRNA

Chain BG

60S RIBOSOMAL PROTEIN L8-A

Chain BX

60S RIBOSOMAL PROTEIN L25