HL_4V8Z_084

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Z_084 not in the Motif Atlas

Homologous match to HL_5TBW_048

Geometric discrepancy: 0.0931

The information below is about HL_5TBW_048

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V8Z|1|B5|A|2220
4V8Z|1|B5|G|2221
4V8Z|1|B5|A|2222
4V8Z|1|B5|A|2223
4V8Z|1|B5|A|2224
4V8Z|1|B5|U|2225

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain Bi

60S RIBOSOMAL PROTEIN L36-A

Chain Bo

60S RIBOSOMAL PROTEIN L42-A