HL_4V8Z_093

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

AACAGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Z_093 not in the Motif Atlas

Homologous match to HL_5TBW_056

Geometric discrepancy: 0.1376

The information below is about HL_5TBW_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

4V8Z|1|B5|A|2673
4V8Z|1|B5|A|2674
4V8Z|1|B5|C|2675
4V8Z|1|B5|A|2676
4V8Z|1|B5|G|2677
4V8Z|1|B5|A|2678
4V8Z|1|B5|A|2679
4V8Z|1|B5|A|2680
4V8Z|1|B5|U|2681

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain A7

SUPPRESSOR PROTEIN STM1

Chain AS

40S RIBOSOMAL PROTEIN S18-A

Chain BJ

60S RIBOSOMAL PROTEIN L11-A