HL_4V8Z_094
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- CAAAAGGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8Z_094 not in the Motif Atlas
- Homologous match to HL_5TBW_057
- Geometric discrepancy: 0.0599
- The information below is about HL_5TBW_057
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 26
Unit IDs
4V8Z|1|B5|C|2693
4V8Z|1|B5|A|2694
4V8Z|1|B5|A|2695
4V8Z|1|B5|A|2696
4V8Z|1|B5|A|2697
4V8Z|1|B5|G|2698
4V8Z|1|B5|G|2699
4V8Z|1|B5|G|2700
Current chains
- Chain B5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain A7
- SUPPRESSOR PROTEIN STM1
- Chain BI
- 60S RIBOSOMAL PROTEIN L10
- Chain BT
- 60S RIBOSOMAL PROTEIN L21-A
- Chain Bo
- 60S RIBOSOMAL PROTEIN L42-A
- Chain CW
- Transfer RNA; tRNA
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