HL_4V8Z_102

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Z_102 not in the Motif Atlas

Geometric match to HL_5TBW_065

Geometric discrepancy: 0.0781

The information below is about HL_5TBW_065

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V8Z|1|B5|C|3025
4V8Z|1|B5|G|3026
4V8Z|1|B5|A|3027
4V8Z|1|B5|G|3028
4V8Z|1|B5|A|3029
4V8Z|1|B5|G|3030

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain BH

60S RIBOSOMAL PROTEIN L9-A

Chain Bm

UBIQUITIN-60S RIBOSOMAL PROTEIN L40

Chain CV

EUKARYOTIC TRANSLATION INITIATION FACTOR 5B, PROBABLE TRANSLATION INITIATION FACTOR IF-2