HL_4V8Z_115
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- AUUCAUAAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8Z_115 not in the Motif Atlas
- Homologous match to HL_5IBB_210
- Geometric discrepancy: 0.2779
- The information below is about HL_5IBB_210
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
4V8Z|1|CW|A|31
4V8Z|1|CW|U|32
4V8Z|1|CW|U|33
4V8Z|1|CW|C|34
4V8Z|1|CW|A|35
4V8Z|1|CW|U|36
4V8Z|1|CW|A|37
4V8Z|1|CW|A|38
4V8Z|1|CW|U|39
Current chains
- Chain CW
- EUKARYOTIC RIBOSOMAL PI TRNA
Nearby chains
- Chain A7
- SUPPRESSOR PROTEIN STM1
- Chain AD
- 40S RIBOSOMAL PROTEIN S3
- Chain AQ
- 40S RIBOSOMAL PROTEIN S16-A
- Chain B2
- Small subunit ribosomal RNA; SSU rRNA
- Chain CX
- 5'-R(*AP*UP*GP)-3'
Coloring options: