HL_4V92_003

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

4V92|1|A2|U|158, 4V92|1|A2|U|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V92_003 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.3378

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V92|1|A2|G|154
4V92|1|A2|U|155
4V92|1|A2|A|156
4V92|1|A2|A|157
4V92|1|A2|U|158
4V92|1|A2|U|159
4V92|1|A2|C|160

Current chains

Chain A2

18S RRNA

Nearby chains

Chain BG

ES6

Chain BY

ES24