HL_4V92_009

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUAAGGGU

Length

8 nucleotides

Bulged bases

4V92|1|A2|A|369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V92_009 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.2728

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

4V92|1|A2|A|367
4V92|1|A2|U|368
4V92|1|A2|A|369
4V92|1|A2|A|370
4V92|1|A2|G|371
4V92|1|A2|G|372
4V92|1|A2|G|373
4V92|1|A2|U|374

Current chains

Chain A2

18S RRNA

Nearby chains

Chain BJ

US4

Chain BX

US12