HL_4V92_041

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCUAGGUAGG

Length

10 nucleotides

Bulged bases

4V92|1|AZ|U|6186

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_12776.1

Basepair signature

cWW-R-R-R-R-R-R-R

Number of instances in this motif group

7

Unit IDs

4V92|1|AZ|C|6180
4V92|1|AZ|C|6181
4V92|1|AZ|U|6186
4V92|1|AZ|A|6187
4V92|1|AZ|G|6188
4V92|1|AZ|G|6189
4V92|1|AZ|U|6190
4V92|1|AZ|A|6191
4V92|1|AZ|G|6195
4V92|1|AZ|G|6196

Current chains

Chain AZ

RNA OF CRICKET-PARALYSIS-VIRUS-IRES

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA