Motif HL_12776.1 Version HL_12776.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-9 | 1-10 | 2-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4RZD_003 | 4RZD | 0.6631 | 0 | A | PreQ1-III riboswitch | G | 63 | C | 64 | U | 65 | G | 66 | G | 67 | C | 68 | G | 69 | G | 70 | U | 71 | C | 72 | cWW | ||
| 2 | HL_4V83_139 | 4V83 | 0.0000 | 0 | CV | domain 3 of PSIC IGR IRES RNA | A | 6160 | U | 6161 | U | 6162 | A | 6163 | A | 6164 | G | 6165 | U | 6166 | G | 6167 | G | 6168 | U | 6169 | cWW | ncWW | |
| 3 | HL_3B31_001 | 3B31 | 0.2694 | 0 | A | RNA (29-MER) | A | 6184 | U | 6185 | U | 6186 | A | 6187 | G | 6188 | G | 6189 | U | 6190 | A | 6191 | G | 6192 | U | 6193 | cWW | ||
| 4 | HL_4V92_041 | 4V92 | 0.5455 | 0 | AZ | CrPV IRES | C | 6180 | C | 6181 | U | 6186 | A | 6187 | G | 6188 | G | 6189 | U | 6190 | A | 6191 | G | 6195 | G | 6196 | cWW | ||
| 5 | HL_387D_001 | 387D | 0.5720 | 0 | A | RNA Pseudoknot | G | 4 | A | 5 | A | 6 | G | 7 | U | 8 | G | 9 | C | 10 | A | 11 | A | 12 | C | 13 | cWW | tWW | |
| 6 | HL_3J7P_066 | 3J7P | 0.6770 | 0 | 5 | LSU rRNA | G | 4644 | C | 4645 | U | 4646 | G | 4647 | A | 4648 | G | 4649 | G | 4650 | A | 4651 | G | 4652 | C | 4653 | ncBW | cWW | |
| 7 | HL_5G2X_006 | 5G2X | 0.6730 | 1 | A | Group II catalytic intron | G | 219 | G | 220 | U | 221 | U | 222 | U | 224 | G | 225 | U | 226 | G | 227 | U | 228 | C | 229 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCUGGCGGUC | 1 |
| AUUAAGUGGU | 1 |
| AUUAGGUAGU | 1 |
| CCUAGGUAGG | 1 |
| GAAGUGCAAC | 1 |
| GCUGAGGAGC | 1 |
| GGUUAUGUGUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUGGCGGU | 1 |
| UUAAGUGG | 1 |
| UUAGGUAG | 1 |
| CUAGGUAG | 1 |
| AAGUGCAA | 1 |
| CUGAGGAG | 1 |
| GUUAUGUGU | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- Basepair signature
- cWW-R-R-R-R-R-R-R
- Heat map statistics
- Min 0.27 | Avg 0.58 | Max 0.95
Coloring options: