HL_4V92_045

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UCGCAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V92_045 not in the Motif Atlas

Geometric match to HL_2IL9_007

Geometric discrepancy: 0.2721

The information below is about HL_2IL9_007

Detailed Annotation

GNRA with near cWW

Broad Annotation

GNRA with near cWW

Motif group

HL_82182.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

4V92|1|A2|U|1120
4V92|1|A2|C|1121
4V92|1|A2|G|1122
4V92|1|A2|C|1123
4V92|1|A2|A|1124
4V92|1|A2|A|1125
4V92|1|A2|G|1126
4V92|1|A2|G|1127

Current chains

Chain A2

18S RRNA

Nearby chains