HL_4V92_049

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUUGUAAUUAUU

Length

12 nucleotides

Bulged bases

4V92|1|A2|U|1557, 4V92|1|A2|U|1558, 4V92|1|A2|A|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V92_049 not in the Motif Atlas

Homologous match to HL_8C3A_224

Geometric discrepancy: 0.2477

The information below is about HL_8C3A_224

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03273.2

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

3

Unit IDs

4V92|1|A2|A|1550
4V92|1|A2|U|1551
4V92|1|A2|U|1552
4V92|1|A2|G|1553
4V92|1|A2|U|1554
4V92|1|A2|A|1555
4V92|1|A2|A|1556
4V92|1|A2|U|1557
4V92|1|A2|U|1558
4V92|1|A2|A|1559
4V92|1|A2|U|1560
4V92|1|A2|U|1561

Current chains

Chain A2

18S RRNA

Nearby chains

Chain BP

US19

Chain BS

US13

Chain BT

ES19