HL_8C3A_224

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AUUGUAAUUGUU

Length

12 nucleotides

Bulged bases

8C3A|1|CM|G|1546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75768.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8C3A|1|CM|A|1537
8C3A|1|CM|U|1538
8C3A|1|CM|U|1539
8C3A|1|CM|G|1540
8C3A|1|CM|U|1541
8C3A|1|CM|A|1542
8C3A|1|CM|A|1543
8C3A|1|CM|U|1544
8C3A|1|CM|U|1545
8C3A|1|CM|G|1546
8C3A|1|CM|U|1547
8C3A|1|CM|U|1548

Current chains

Chain CM

18S

Nearby chains

Chain DC

40S ribosomal protein S15

Chain DF

40S ribosomal protein S18-B

Chain DG

40S ribosomal protein S19-A

Chain DQ

40S ribosomal protein S29A