HL_4V92_051

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V92_051 not in the Motif Atlas

Homologous match to HL_8P9A_209

Geometric discrepancy: 0.2161

The information below is about HL_8P9A_209

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4V92|1|A2|A|900
4V92|1|A2|G|901
4V92|1|A2|G|902
4V92|1|A2|U|903
4V92|1|A2|G|904
4V92|1|A2|A|905
4V92|1|A2|A|906
4V92|1|A2|A|907
4V92|1|A2|U|908
4V92|1|A2|U|909

Current chains

Chain A2

18S RRNA

Nearby chains

Chain BO

US11

Chain Ba

ES26