HL_4V92_052

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

4V92|1|A2|G|1243, 4V92|1|A2|G|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V92_052 not in the Motif Atlas

Homologous match to HL_8P9A_216

Geometric discrepancy: 0.3246

The information below is about HL_8P9A_216

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4V92|1|A2|A|1238
4V92|1|A2|U|1239
4V92|1|A2|U|1240
4V92|1|A2|G|1241
4V92|1|A2|A|1242
4V92|1|A2|G|1243
4V92|1|A2|A|1244
4V92|1|A2|G|1245
4V92|1|A2|C|1246
4V92|1|A2|U|1247

Current chains

Chain A2

18S RRNA

Nearby chains

Chain BP

US19