HL_4V95_033
3D structure
- PDB id
- 4V95 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of YAEJ bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GUUCAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V95_033 not in the Motif Atlas
- Homologous match to HL_5HR7_006
- Geometric discrepancy: 0.0964
- The information below is about HL_5HR7_006
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 96
Unit IDs
4V95|1|AV|G|53
4V95|1|AV|U|54
4V95|1|AV|U|55
4V95|1|AV|C|56
4V95|1|AV|A|57
4V95|1|AV|A|58
4V95|1|AV|A|59
4V95|1|AV|U|60
4V95|1|AV|C|61
Current chains
- Chain AV
- P-site fMet-tRNA
Nearby chains
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BG
- 50S Ribosomal Protein L5
- Chain BQ
- 50S Ribosomal Protein L16
Coloring options: