HL_4V95_133
3D structure
- PDB id
- 4V95 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of YAEJ bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 4V95|1|CV|C|16, 4V95|1|CV|G|18, 4V95|1|CV|G|19, 4V95|1|CV|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V95_133 not in the Motif Atlas
- Homologous match to HL_4V9Q_213
- Geometric discrepancy: 0.1872
- The information below is about HL_4V9Q_213
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_63054.1
- Basepair signature
- cWW-cWS-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
4V95|1|CV|C|13
4V95|1|CV|A|14
4V95|1|CV|G|15
4V95|1|CV|C|16
4V95|1|CV|C|17
4V95|1|CV|U|17|||B
4V95|1|CV|G|18
4V95|1|CV|G|19
4V95|1|CV|U|20
4V95|1|CV|A|21
4V95|1|CV|G|22
Current chains
- Chain CV
- P-site fMet-tRNA
Nearby chains
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
- Chain DG
- 50S Ribosomal Protein L5
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