Motif HL_63054.2 Version HL_63054.2 of this group appears in releases 4.1 to 4.7
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 7-8 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5J8B_108 | 5J8B | 0.5110 | 3 | tRNA D-loop (H) | x | tRNA | C | 13 | A | 14 | G | 15 | C | 16 | C | 17 | U | 17|||A | A | 21 | G | 22 | cWW | cWS | |
| 2 | HL_4WT8_215 | 4WT8 | 0.3891 | 3 | tRNA D-loop | D4 | tRNA | C | 13 | A | 14 | G | 15 | C | 16 | C | 17 | U | 18 | A | 22 | G | 23 | cWW | ncWS | |
| 3 | HL_4V9Q_213 | 4V9Q | 0.2522 | 3 | tRNA D-loop | DV | tRNA | C | 13 | A | 14 | G | 15 | C | 16 | C | 17 | U | 17|||A | A | 21 | G | 22 | cWW | ncSH | |
| 4 | HL_6CFJ_106 | 6CFJ | 0.0000 | 3 | tRNA D-loop | 1x | tRNA | C | 13 | A | 14 | G | 15 | C | 16 | C | 17 | U | 17|||A | A | 21 | G | 22 | cWW | cWS | |
| 5 | HL_4TUE_141 | 4TUE | 0.2381 | 3 | tRNA D-loop (H) | XV | tRNA | C | 12 | A | 13 | G | 14 | C | 15 | C | 16 | U | 17 | A | 21 | G | 22 | cWW | cWS | |
| 6 | HL_1J1U_001 | 1J1U | 0.2457 | 3 | tRNA D-loop | B | tRNA | C | 513 | A | 514 | G | 515 | C | 516 | C | 517 | U | 518 | A | 522 | G | 523 | cWW | ncWS | |
| 7 | HL_2ZUE_001 | 2ZUE | 0.3182 | 4 | tRNA D-loop | B | tRNA | U | 913 | A | 914 | G | 915 | C | 916 | C | 917 | A | 917|||A | A | 921 | G | 922 | cWW | cWS | |
| 8 | HL_8B0X_030 | 8B0X | 0.3108 | 3 | tRNA D-loop (H) | Z | tRNA | C | 13 | A | 14 | G | 15 | C | 16 | C | 17 | U | 17|||A | A | 21 | G | 22 | cWW | ncWS | |
| 9 | HL_7VNV_007 | 7VNV | 0.4431 | 4 | tRNA D-loop | A | tRNA | PSU | 13 | A | 14 | 7SN | 15 | C | 16 | OMC | 17 | U | 17|||a | A | 21 | G | 22 | cWW | ||
| 10 | HL_5WT1_001 | 5WT1 | 0.4481 | 3 | tRNA D-loop | C | tRNA | C | 13 | A | 14 | G | 15 | C | 16 | C | 17 | U | 17|||A | A | 21 | G | 22 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGCCUGGUAG | 7 |
| UAGCCAGGACAG | 1 |
| (PSU)A(7SN)C(OMC)UGGUUAG | 1 |
| CAGCCUGGGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGCCUGGUA | 7 |
| AGCCAGGACA | 1 |
| A(7SN)C(OMC)UGGUUA | 1 |
| AGCCUGGGA | 1 |
Release history
| Release | 4.1 | 4.2 | 4.3 | 4.4 | 4.5 | 4.6 | 4.7 |
|---|---|---|---|---|---|---|---|
| Date | 2025-09-10 | 2025-10-08 | 2025-11-05 | 2025-12-03 | 2025-12-31 | 2026-01-28 | 2026-02-25 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tRNA D-loop (7)
- tRNA D-loop (H) (3)
- Basepair signature
- cWW-cWS-F-F-F-F
- Heat map statistics
- Min 0.24 | Avg 0.39 | Max 0.67
Coloring options: