HL_4V97_066

3D structure

PDB id

4V97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G299A.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CCGCGAAGACAGCCUCGAGUGG

Length

22 nucleotides

Bulged bases

4V97|1|BA|A|1046, 4V97|1|BA|C|1052, 4V97|1|BA|C|1053

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V97_066 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.3105

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

4V97|1|BA|C|1040
4V97|1|BA|C|1041
4V97|1|BA|G|1042
4V97|1|BA|C|1043
4V97|1|BA|G|1044
4V97|1|BA|A|1045
4V97|1|BA|A|1046
4V97|1|BA|G|1047
4V97|1|BA|A|1048
4V97|1|BA|C|1049
4V97|1|BA|A|1050
4V97|1|BA|G|1051
4V97|1|BA|C|1052
4V97|1|BA|C|1053
4V97|1|BA|U|1108
4V97|1|BA|C|1109
4V97|1|BA|G|1110
4V97|1|BA|A|1111
4V97|1|BA|G|1112
4V97|1|BA|U|1113
4V97|1|BA|G|1114
4V97|1|BA|G|1115

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BH

50S RIBOSOMAL PROTEIN L6

Chain BZ

50S RIBOSOMAL PROTEIN L25