HL_4V97_173

3D structure

PDB id

4V97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G299A.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GAUAGCUCAC

Length

10 nucleotides

Bulged bases

4V97|1|DA|A|1096

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V97_173 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.3428

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

4V97|1|DA|G|1055
4V97|1|DA|A|1096
4V97|1|DA|U|1097
4V97|1|DA|A|1098
4V97|1|DA|G|1099
4V97|1|DA|C|1100
4V97|1|DA|U|1101
4V97|1|DA|C|1102
4V97|1|DA|A|1103
4V97|1|DA|C|1104

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D9

50S RIBOSOMAL PROTEIN L36

Chain DH

50S RIBOSOMAL PROTEIN L6