HL_4V99_056

3D structure

PDB id

4V99 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Crystallographic Structure of Panicum Mosaic Virus

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AUUUUU

Length

6 nucleotides

Bulged bases

4V99|1|Ec|U|9

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V99_056 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.215

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

4V99|1|Ec|A|6
4V99|1|Ec|U|7
4V99|1|Ec|U|8
4V99|1|Ec|U|9
4V99|1|Ec|U|10
4V99|1|Ec|U|11

Current chains

Chain Ec

5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'

Nearby chains

Chain EZ

Capsid protein

Chain Ea

Capsid protein

Chain Eb

Capsid protein

Chain Ee

Capsid protein

Chain Ef

Capsid protein