HL_4V9A_064

3D structure

PDB id

4V9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tetracycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9A_064 not in the Motif Atlas

Homologous match to HL_7RQB_028

Geometric discrepancy: 0.0823

The information below is about HL_7RQB_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

4V9A|1|BA|G|978
4V9A|1|BA|G|979
4V9A|1|BA|A|980
4V9A|1|BA|A|981
4V9A|1|BA|C|982
4V9A|1|BA|A|983
4V9A|1|BA|A|984
4V9A|1|BA|C|985

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B1

50S ribosomal protein L20

Chain BX

50S ribosomal protein L30