4V9A Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4V9A_001 | 1/AA/12:22 | No text annotation | homologous HL_4LFB_001 HL_89881.5 | |
| HL_4V9A_002 | 1/AA/78:91 | No text annotation | geometric HL_2ZNI_001 HL_75660.5 | |
| HL_4V9A_003 | 1/AA/158:163 | GNRA | homologous HL_4LFB_003 HL_37824.8 | |
| HL_4V9A_217 | 1/AA/186:191 | No text annotation | homologous HL_4LFB_004 HL_48417.6 | |
| HL_4V9A_005 | 1/AA/201:216 | Mini UNCG | homologous HL_4LFB_005 HL_48778.2 | |
| HL_4V9A_006 | 1/AA/259:267 | GNRA related | homologous HL_4LFB_006 HL_84299.4 | |
| HL_4V9A_007 | 1/AA/296:301 | GNRA | homologous HL_4LFB_007 HL_37824.8 | |
| HL_4V9A_008 | 1/AA/320:333 | No text annotation | homologous HL_5J7L_008 HL_81205.3 | |
| HL_4V9A_009 | 1/AA/342:347 | UNCG | homologous HL_6CZR_080 NA | |
| HL_4V9A_010 | 1/AA/379:384 | GNRA | homologous HL_4LFB_010 HL_37824.8 | |
| HL_4V9A_011 | 1/AA/419:424 | UNCG | homologous HL_4LFB_011 HL_34617.5 | |
| HL_4V9A_012 | 1/AA/458:474 | GNRA | homologous HL_4LFB_012 HL_37824.8 | |
| HL_4V9A_013 | 1/AA/522:527 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_4V9A_218 | 1/AA/617:623 | GNRA-like with tWH | homologous HL_4LFB_014 HL_10453.3 | |
| HL_4V9A_015 | 1/AA/689:698 | No text annotation | homologous HL_5J7L_015 HL_75293.5 | |
| HL_4V9A_016 | 1/AA/726:731 | GNRA | homologous HL_4LFB_016 HL_37824.8 | |
| HL_4V9A_017 | 1/AA/786:796 | No text annotation | homologous HL_4LFB_017 HL_75293.5 | |
| HL_4V9A_018 | 1/AA/838:848 | Mini UNCG | homologous HL_6CZR_089 NA | |
| HL_4V9A_019 | 1/AA/862:867 | GNRA | homologous HL_4LFB_019 HL_37824.8 | |
| HL_4V9A_020 | 1/AA/897:902 | GNRA | homologous HL_4LFB_020 HL_37824.8 | |
| HL_4V9A_021 | 1/AA/963:972 | No text annotation | homologous HL_4LFB_021 HL_50779.4 | |
| HL_4V9A_022 | 1/AA/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.8 | |
| HL_4V9A_023 | 1/AA/1028:1033 | No text annotation | ||
| HL_4V9A_024 | 1/AA/1076:1081 | GNRA | homologous HL_4LFB_024 HL_37824.8 | |
| HL_4V9A_025 | 1/AA/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
| HL_4V9A_026 | 1/AA/1134:1140 | No text annotation | homologous HL_6CZR_097 NA | |
| HL_4V9A_027 | 1/AA/1165:1171 | GNRA | homologous HL_4LFB_027 HL_37824.8 | |
| HL_4V9A_028 | 1/AA/1265:1270 | GNRA | homologous HL_4LFB_028 HL_37824.8 | |
| HL_4V9A_029 | 1/AA/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_4V9A_030 | 1/AA/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_4V9A_031 | 1/AA/1449:1454 | No text annotation | homologous HL_6CZR_102 NA | |
| HL_4V9A_032 | 1/AA/1515:1520 | GNRA | homologous HL_4LFB_032 HL_37824.8 | |
| HL_4V9A_033 | 1/AC/13:22 | tRNA D-loop | homologous HL_4TUE_033 HL_93616.2 | |
| HL_4V9A_034 | 1/AC/31:39 | tRNA anticodon loop | homologous HL_5E81_212 HL_06059.7 | |
| HL_4V9A_035 | 1/AC/53:61 | T-loop with 2 stacked bulged bases | homologous HL_5HR7_006 HL_28252.9 | |
| HL_4V9A_036 | 1/BA/59:68 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_4V9A_037 | 1/BA/87:95 | No text annotation | homologous HL_7RQB_002 NA | |
| HL_4V9A_038 | 1/BA/123:128 | No text annotation | homologous HL_7RQB_003 NA | |
| HL_4V9A_039 | 1/BA/137A:141A | No text annotation | homologous HL_7RQB_004 NA | |
| HL_4V9A_219 | 1/BA/155:171 | UNCG variation | geometric HL_8S95_003 HL_53890.2 | |
| HL_4V9A_041 | 1/BA/194:201 | No text annotation | geometric HL_7RQB_006 NA | |
| HL_4V9A_042 | 1/BA/225:230 | No text annotation | homologous HL_7A0S_007 HL_53890.2 | |
| HL_4V9A_043 | 1/BA/246:252 | No text annotation | homologous HL_7RQB_008 NA | |
| HL_4V9A_044 | 1/BA/270K:270N | No text annotation | geometric HL_5TBW_068 NA | |
| HL_4V9A_045 | 1/BA/305:312 | No text annotation | homologous HL_7RQB_010 NA | |
| HL_4V9A_046 | 1/BA/319:323 | No text annotation | homologous HL_5J7L_143 HL_75660.5 | |
| HL_4V9A_047 | 1/BA/327:335 | T-loop with unstacked turn | homologous HL_7RQB_012 NA | |
| HL_4V9A_220 | 1/BA/383:391 | No text annotation | ||
| HL_4V9A_049 | 1/BA/410:417 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_4V9A_050 | 1/BA/462:467 | GNRA | homologous HL_7A0S_015 HL_37824.8 | |
| HL_4V9A_051 | 1/BA/487:493 | GNRA | homologous HL_7A0S_016 HL_37824.8 | |
| HL_4V9A_052 | 1/BA/544:549 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
| HL_4V9A_053 | 1/BA/566:575 | No text annotation | homologous HL_7RQB_018 NA | |
| HL_4V9A_054 | 1/BA/611:617 | No text annotation | homologous HL_7A0S_019 HL_47787.2 | |
| HL_4V9A_055 | 1/BA/629:634 | GNRA | homologous HL_7RQB_020 NA | |
| HL_4V9A_056 | 1/BA/641:647 | No text annotation | homologous HL_7RQB_021 NA | |
| HL_4V9A_058 | 1/BA/712:719 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_4V9A_059 | 1/BA/744:753 | No text annotation | homologous HL_7RQB_023 NA | |
| HL_4V9A_060 | 1/BA/779:785 | UNCG variation | homologous HL_7A0S_023 HL_53890.2 | |
| HL_4V9A_061 | 1/BA/826:831 | No text annotation | homologous HL_5J7L_157 HL_55195.3 | |
| HL_4V9A_062 | 1/BA/884:892 | No text annotation | homologous HL_7RQB_026 NA | |
| HL_4V9A_063 | 1/BA/955:962 | GNRA | homologous HL_7RQB_027 NA | |
| HL_4V9A_064 | 1/BA/978:985 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_4V9A_065 | 1/BA/1064:1074 | No text annotation | homologous HL_6PRV_001 HL_19210.3 | |
| HL_4V9A_066 | 1/BA/1087:1102 | No text annotation | homologous HL_5J7L_162 NA | |
| HL_4V9A_067 | 1/BA/1171:1178 | Mini UNCG | geometric HL_1ZBH_001 HL_56334.1 | |
| HL_4V9A_068 | 1/BA/1223:1228 | GNRA | homologous HL_7RQB_032 NA | |
| HL_4V9A_069 | 1/BA/1281:1289 | No text annotation | homologous HL_7RQB_033 NA | |
| HL_4V9A_070 | 1/BA/1324:1330 | No text annotation | homologous HL_7RQB_034 NA | |
| HL_4V9A_071 | 1/BA/1363:1368 | GNRA | homologous HL_7RQB_035 NA | |
| HL_4V9A_072 | 1/BA/1389:1398 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_4V9A_073 | 1/BA/1451:1459 | No text annotation | homologous HL_7RQB_037 NA | |
| HL_4V9A_074 | 1/BA/1492:1498 | No text annotation | homologous HL_7RQB_038 NA | |
| HL_4V9A_075 | 1/BA/1533:1538 | No text annotation | ||
| HL_4V9A_076 | 1/BA/1565:1568 | Mini UNCG | homologous HL_7A0S_039 HL_48778.2 | |
| HL_4V9A_077 | 1/BA/1612:1619 | No text annotation | homologous HL_7A0S_040 HL_89567.2 | |
| HL_4V9A_078 | 1/BA/1630A:1635 | No text annotation | homologous HL_7RQB_041 NA | |
| HL_4V9A_079 | 1/BA/1691:1696 | UNCG | geometric HL_5D5L_003 HL_34617.5 | |
| HL_4V9A_080 | 1/BA/1727:1733 | No text annotation | homologous HL_7RQB_043 NA | |
| HL_4V9A_081 | 1/BA/1752:1756 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_4V9A_082 | 1/BA/1777:1787 | No text annotation | homologous HL_5J7L_178 HL_01962.2 | |
| HL_4V9A_083 | 1/BA/1806:1811 | GNRA | homologous HL_7RQB_046 NA | |
| HL_4V9A_084 | 1/BA/1864:1878 | GNRA | homologous HL_7RQB_047 NA | |
| HL_4V9A_085 | 1/BA/1910:1920 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_4V9A_086 | 1/BA/1949:1957 | No text annotation | homologous HL_7RQB_049 NA | |
| HL_4V9A_087 | 1/BA/2027:2036 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_4V9A_088 | 1/BA/2140:2151 | No text annotation | ||
| HL_4V9A_089 | 1/BA/2209:2215 | No text annotation | ||
| HL_4V9A_090 | 1/BA/2248:2256 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_4V9A_091 | 1/BA/2264:2276 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_4V9A_092 | 1/BA/2303:2313 | No text annotation | homologous HL_5J7L_188 NA | |
| HL_4V9A_093 | 1/BA/2324:2331 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_4V9A_094 | 1/BA/2355:2362 | No text annotation | homologous HL_7RQB_057 NA | |
| HL_4V9A_095 | 1/BA/2374:2379 | GNRA | homologous HL_7RQB_058 NA | |
| HL_4V9A_096 | 1/BA/2404:2413 | No text annotation | homologous HL_7RQB_059 NA | |
| HL_4V9A_097 | 1/BA/2471:2479 | No text annotation | homologous HL_7RQB_060 NA | |
| HL_4V9A_098 | 1/BA/2528:2535 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_4V9A_099 | 1/BA/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_30068.2 | |
| HL_4V9A_100 | 1/BA/2594:2599 | GNRA | homologous HL_7RQB_063 NA | |
| HL_4V9A_101 | 1/BA/2658:2663 | GNRA | homologous HL_7RQB_064 NA | |
| HL_4V9A_102 | 1/BA/2701:2706 | No text annotation | homologous HL_7RQB_065 NA | |
| HL_4V9A_103 | 1/BA/2745:2759 | No text annotation | homologous HL_7RQB_066 NA | |
| HL_4V9A_105 | 1/BA/2819:2827 | No text annotation | homologous HL_7RQB_068 NA | |
| HL_4V9A_106 | 1/BA/2856:2861 | GNRA | homologous HL_7RQB_069 NA | |
| HL_4V9A_222 | 1/BB/34:48 | No text annotation | homologous HL_9DFE_067 HL_97756.2 | |
| HL_4V9A_107 | 1/BB/38:44 | No text annotation | homologous HL_7RQB_070 NA | |
| HL_4V9A_108 | 1/BB/86:90 | GNRA | homologous HL_7RQB_071 NA | |
| HL_4V9A_109 | 1/CA/12:22 | No text annotation | homologous HL_4LFB_001 HL_89881.5 | |
| HL_4V9A_110 | 1/CA/80:89 | No text annotation | ||
| HL_4V9A_111 | 1/CA/158:163 | GNRA | homologous HL_4LFB_003 HL_37824.8 | |
| HL_4V9A_223 | 1/CA/186:191 | No text annotation | homologous HL_4LFB_004 HL_48417.6 | |
| HL_4V9A_113 | 1/CA/201:216 | Mini UNCG | homologous HL_4LFB_005 HL_48778.2 | |
| HL_4V9A_114 | 1/CA/259:267 | GNRA related | homologous HL_4LFB_006 HL_84299.4 | |
| HL_4V9A_115 | 1/CA/296:301 | GNRA | homologous HL_4LFB_007 HL_37824.8 | |
| HL_4V9A_116 | 1/CA/320:333 | No text annotation | homologous HL_4LFB_008 HL_81205.3 | |
| HL_4V9A_117 | 1/CA/342:347 | UNCG | homologous HL_5J7L_009 HL_34617.5 | |
| HL_4V9A_118 | 1/CA/379:384 | GNRA | homologous HL_4LFB_010 HL_37824.8 | |
| HL_4V9A_119 | 1/CA/419:424 | UNCG | homologous HL_5J7L_011 HL_34617.5 | |
| HL_4V9A_120 | 1/CA/458:474 | GNRA | homologous HL_6CZR_083 NA | |
| HL_4V9A_121 | 1/CA/522:527 | GNRA variation | geometric HL_1MFQ_001 HL_37824.8 | |
| HL_4V9A_122 | 1/CA/617:623 | No text annotation | homologous HL_6CZR_085 NA | |
| HL_4V9A_123 | 1/CA/689:698 | No text annotation | homologous HL_4LFB_015 HL_75293.5 | |
| HL_4V9A_124 | 1/CA/726:731 | GNRA | homologous HL_4LFB_016 HL_37824.8 | |
| HL_4V9A_125 | 1/CA/786:796 | No text annotation | homologous HL_4LFB_017 HL_75293.5 | |
| HL_4V9A_126 | 1/CA/838:848 | Mini UNCG | homologous HL_4LFB_018 HL_48778.2 | |
| HL_4V9A_127 | 1/CA/862:867 | GNRA | homologous HL_4LFB_019 HL_37824.8 | |
| HL_4V9A_128 | 1/CA/897:902 | GNRA | homologous HL_4LFB_020 HL_37824.8 | |
| HL_4V9A_224 | 1/CA/963:972 | No text annotation | homologous HL_4LFB_021 HL_50779.4 | |
| HL_4V9A_130 | 1/CA/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.8 | |
| HL_4V9A_132 | 1/CA/1076:1081 | GNRA | homologous HL_5J7L_023 HL_37824.8 | |
| HL_4V9A_133 | 1/CA/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
| HL_4V9A_134 | 1/CA/1134:1140 | No text annotation | homologous HL_4LFB_026 HL_87954.2 | |
| HL_4V9A_135 | 1/CA/1165:1171 | GNRA | homologous HL_4LFB_027 HL_37824.8 | |
| HL_4V9A_136 | 1/CA/1264:1271 | GNRA with extra cWW | geometric HL_7A0S_056 HL_04259.3 | |
| HL_4V9A_137 | 1/CA/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_4V9A_138 | 1/CA/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_4V9A_139 | 1/CA/1449:1454 | Mini UNCG | geometric HL_5T16_002 HL_56334.1 | |
| HL_4V9A_140 | 1/CA/1515:1520 | GNRA | homologous HL_4LFB_032 HL_37824.8 | |
| HL_4V9A_141 | 1/CC/13:22 | tRNA D-loop | homologous HL_5E81_211 HL_93616.2 | |
| HL_4V9A_142 | 1/CC/31:39 | tRNA anticodon loop | homologous HL_6CFJ_107 HL_06059.7 | |
| HL_4V9A_143 | 1/CC/53:61 | T-loop with 2 stacked bulged bases | homologous HL_6UGG_006 HL_28252.9 | |
| HL_4V9A_144 | 1/DA/59:68 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_4V9A_145 | 1/DA/87:95 | Externally structured | geometric HL_5TBW_022 NA | |
| HL_4V9A_146 | 1/DA/123:128 | No text annotation | homologous HL_7RQB_003 NA | |
| HL_4V9A_147 | 1/DA/137A:141A | No text annotation | homologous HL_7RQB_004 NA | |
| HL_4V9A_149 | 1/DA/194:201 | No text annotation | homologous HL_4WF9_006 HL_30068.2 | |
| HL_4V9A_150 | 1/DA/225:230 | No text annotation | homologous HL_7RQB_007 NA | |
| HL_4V9A_151 | 1/DA/246:252 | No text annotation | homologous HL_7RQB_008 NA | |
| HL_4V9A_152 | 1/DA/270J:270P | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_4V9A_225 | 1/DA/305:312 | T-loop with 1 bulged base | homologous HL_9DFE_009 HL_01609.3 | |
| HL_4V9A_154 | 1/DA/319:323 | No text annotation | homologous HL_5J7L_143 HL_75660.5 | |
| HL_4V9A_155 | 1/DA/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.2 | |
| HL_4V9A_156 | 1/DA/382:392 | No text annotation | homologous HL_7RQB_013 NA | |
| HL_4V9A_157 | 1/DA/410:417 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_4V9A_158 | 1/DA/462:467 | GNRA | homologous HL_4WF9_015 HL_37824.8 | |
| HL_4V9A_159 | 1/DA/487:493 | GNRA | homologous HL_4WF9_016 HL_37824.8 | |
| HL_4V9A_160 | 1/DA/544:549 | GNRA | geometric HL_1KH6_002 HL_37824.8 | |
| HL_4V9A_161 | 1/DA/566:575 | No text annotation | homologous HL_7RQB_018 NA | |
| HL_4V9A_162 | 1/DA/611:617 | No text annotation | homologous HL_7RQB_019 NA | |
| HL_4V9A_163 | 1/DA/629:634 | GNRA | homologous HL_7RQB_020 NA | |
| HL_4V9A_164 | 1/DA/641:647 | No text annotation | homologous HL_7RQB_021 NA | |
| HL_4V9A_165 | 1/DA/654G:654N | No text annotation | geometric HL_2Y9H_003 HL_75660.5 | |
| HL_4V9A_166 | 1/DA/712:719 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_4V9A_167 | 1/DA/744:753 | No text annotation | homologous HL_7RQB_023 NA | |
| HL_4V9A_168 | 1/DA/779:785 | UNCG variation | homologous HL_7A0S_023 HL_53890.2 | |
| HL_4V9A_169 | 1/DA/826:831 | No text annotation | homologous HL_5J7L_157 HL_55195.3 | |
| HL_4V9A_170 | 1/DA/883:893 | No text annotation | ||
| HL_4V9A_171 | 1/DA/955:962 | GNRA | homologous HL_7RQB_027 NA | |
| HL_4V9A_172 | 1/DA/978:985 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_4V9A_173 | 1/DA/1063:1075 | No text annotation | ||
| HL_4V9A_174 | 1/DA/1092:1099 | No text annotation | geometric HL_5J7L_151 HL_80922.2 | |
| HL_4V9A_176 | 1/DA/1223:1228 | GNRA | homologous HL_7RQB_032 NA | |
| HL_4V9A_177 | 1/DA/1281:1289 | No text annotation | homologous HL_7RQB_033 NA | |
| HL_4V9A_178 | 1/DA/1324:1330 | No text annotation | geometric HL_7RQB_034 NA | |
| HL_4V9A_179 | 1/DA/1363:1368 | GNRA | homologous HL_7RQB_035 NA | |
| HL_4V9A_180 | 1/DA/1389:1398 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_4V9A_181 | 1/DA/1451:1459 | No text annotation | geometric HL_7RQB_037 NA | |
| HL_4V9A_182 | 1/DA/1492:1498 | No text annotation | homologous HL_7RQB_038 NA | |
| HL_4V9A_183 | 1/DA/1533:1538 | No text annotation | geometric HL_4V88_198 NA | |
| HL_4V9A_184 | 1/DA/1565:1568 | No text annotation | homologous HL_7RQB_039 NA | |
| HL_4V9A_185 | 1/DA/1612:1619 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_4V9A_186 | 1/DA/1630A:1635 | No text annotation | homologous HL_7RQB_041 NA | |
| HL_4V9A_187 | 1/DA/1691:1696 | UNCG | geometric HL_4PMI_004 HL_34617.5 | |
| HL_4V9A_188 | 1/DA/1727:1733 | No text annotation | homologous HL_7RQB_043 NA | |
| HL_4V9A_189 | 1/DA/1752:1756 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_4V9A_190 | 1/DA/1777:1787 | No text annotation | homologous HL_5J7L_178 HL_01962.2 | |
| HL_4V9A_191 | 1/DA/1806:1811 | GNRA | homologous HL_7RQB_046 NA | |
| HL_4V9A_192 | 1/DA/1864:1878 | GNRA | homologous HL_7RQB_047 NA | |
| HL_4V9A_193 | 1/DA/1910:1920 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_4V9A_194 | 1/DA/1949:1957 | No text annotation | homologous HL_7RQB_049 NA | |
| HL_4V9A_195 | 1/DA/2027:2036 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_4V9A_197 | 1/DA/2209:2215 | No text annotation | homologous HL_7RQB_052 NA | |
| HL_4V9A_198 | 1/DA/2248:2256 | No text annotation | homologous HL_4WF9_049 HL_85367.2 | |
| HL_4V9A_199 | 1/DA/2264:2276 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_4V9A_200 | 1/DA/2303:2313 | No text annotation | homologous HL_7RQB_055 NA | |
| HL_4V9A_201 | 1/DA/2324:2331 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_4V9A_202 | 1/DA/2355:2362 | No text annotation | homologous HL_7RQB_057 NA | |
| HL_4V9A_203 | 1/DA/2374:2379 | GNRA | homologous HL_5J7L_191 HL_37824.8 | |
| HL_4V9A_204 | 1/DA/2404:2413 | No text annotation | homologous HL_7RQB_059 NA | |
| HL_4V9A_205 | 1/DA/2471:2479 | No text annotation | homologous HL_4WF9_056 HL_32735.2 | |
| HL_4V9A_206 | 1/DA/2528:2535 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_4V9A_207 | 1/DA/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_30068.2 | |
| HL_4V9A_208 | 1/DA/2594:2599 | GNRA | homologous HL_7RQB_063 NA | |
| HL_4V9A_209 | 1/DA/2658:2663 | GNRA | geometric HL_1MZP_001 HL_37824.8 | |
| HL_4V9A_210 | 1/DA/2701:2706 | No text annotation | homologous HL_7RQB_065 NA | |
| HL_4V9A_211 | 1/DA/2745:2759 | No text annotation | homologous HL_7A0S_065 HL_74055.2 | |
| HL_4V9A_213 | 1/DA/2819:2827 | No text annotation | homologous HL_7RQB_068 NA | |
| HL_4V9A_214 | 1/DA/2856:2861 | GNRA | homologous HL_7RQB_069 NA | |
| HL_4V9A_227 | 1/DB/34:48 | No text annotation | homologous HL_4V9F_074 HL_97756.2 | |
| HL_4V9A_215 | 1/DB/38:44 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_4V9A_216 | 1/DB/86:90 | GNRA | homologous HL_7RQB_071 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V9A_004 | No text annotation | ||
| HL_4V9A_014 | No text annotation | ||
| HL_4V9A_040 | No text annotation | ||
| HL_4V9A_048 | No text annotation | ||
| HL_4V9A_228 | No text annotation | ||
| HL_4V9A_221 | No text annotation | ||
| HL_4V9A_057 | No text annotation | ||
| HL_4V9A_104 | No text annotation | ||
| HL_4V9A_112 | No text annotation | ||
| HL_4V9A_129 | No text annotation | ||
| HL_4V9A_131 | No text annotation | ||
| HL_4V9A_148 | No text annotation | ||
| HL_4V9A_153 | No text annotation | ||
| HL_4V9A_175 | No text annotation | ||
| HL_4V9A_196 | No text annotation | ||
| HL_4V9A_229 | No text annotation | ||
| HL_4V9A_212 | No text annotation | ||
| HL_4V9A_226 | No text annotation | ||
| HL_4V9A_230 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4V9A_001 | 1/AA/30:32, 1/AA/552:553 | Single bulged G | homologous IL_4LFB_001 IL_00225.14 | |
| IL_4V9A_002 | 1/AA/44:45, 1/AA/396:398 | Single bulged A | homologous IL_4LFB_002 IL_31462.7 | |
| IL_4V9A_003 | 1/AA/47:52, 1/AA/359:361 | No text annotation | homologous IL_4LFB_003 IL_14177.2 | |
| IL_4V9A_004 | 1/AA/54:56, 1/AA/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_51454.3 | |
| IL_4V9A_005 | 1/AA/63:66, 1/AA/103:104 | Multiple bulged bases | homologous IL_4LFB_005 IL_82107.5 | |
| IL_4V9A_006 | 1/AA/67:69, 1/AA/99:102 | Isolated non-canonical cWW pair | geometric IL_5J7L_061 IL_87907.2 | |
| IL_4V9A_008 | 1/AA/129:131, 1/AA/231:232 | Multiple bulged bases | homologous IL_6CZR_119 NA | |
| IL_4V9A_009 | 1/AA/132:136, 1/AA/227:230 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_4V9A_010 | 1/AA/148:153, 1/AA/168:174 | tWH-tWH-tHW-tHW | homologous IL_4LFB_009 IL_12745.1 | |
| IL_4V9A_367 | 1/AA/186:186, 1/AA/191:191 | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_87907.2 | |
| IL_4V9A_012 | 1/AA/242:247, 1/AA/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.3 | |
| IL_4V9A_013 | 1/AA/249:252, 1/AA/274:275 | No text annotation | homologous IL_4LFB_012 IL_47074.2 | |
| IL_4V9A_014 | 1/AA/292:293, 1/AA/304:308 | C-loop | homologous IL_4LFB_013 IL_03109.3 | |
| IL_4V9A_015 | 1/AA/367:369, 1/AA/392:393 | Single bulged U | homologous IL_5J7L_017 IL_89505.4 | |
| IL_4V9A_016 | 1/AA/371:375, 1/AA/389:390 | C-loop | homologous IL_5J7L_018 IL_03109.3 | |
| IL_4V9A_017 | 1/AA/375:376, 1/AA/387:389 | Single bulged G | geometric IL_4LFB_016 IL_00225.14 | |
| IL_4V9A_018 | 1/AA/409:416, 1/AA/427:433 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
| IL_4V9A_019 | 1/AA/446:450, 1/AA/483:488 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_6CZR_130 NA | |
| IL_4V9A_368 | 1/AA/450:455, 1/AA/477:483 | No text annotation | homologous IL_4LFB_019 IL_31561.1 | |
| IL_4V9A_021 | 1/AA/504:511, 1/AA/540:541 | SSU/LSU pseudoknot | homologous IL_5J7L_024 IL_41203.4 | |
| IL_4V9A_022 | 1/AA/515:521, 1/AA/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_4V9A_023 | 1/AA/569:575, 1/AA/880:881 | No text annotation | homologous IL_4LFB_022 IL_38186.6 | |
| IL_4V9A_024 | 1/AA/580:584, 1/AA/757:761 | tSH-tHW-tHS | homologous IL_4LFB_023 IL_17136.7 | |
| IL_4V9A_025 | 1/AA/594:596, 1/AA/644:645 | Major groove platform | homologous IL_4LFB_024 IL_48076.6 | |
| IL_4V9A_026 | 1/AA/597:598, 1/AA/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_4LFB_025 IL_68140.4 | |
| IL_4V9A_027 | 1/AA/605:612, 1/AA/628:633 | No text annotation | homologous IL_5J7L_030 IL_78349.3 | |
| IL_4V9A_028 | 1/AA/654:655, 1/AA/751:754 | Major groove platform; stack outside cWW | homologous IL_4LFB_027 IL_50694.7 | |
| IL_4V9A_029 | 1/AA/657:658, 1/AA/747:749 | Major groove platform | homologous IL_4LFB_028 IL_48076.6 | |
| IL_4V9A_030 | 1/AA/662:666, 1/AA/740:743 | Tandem non-canonical cWW pairs | homologous IL_4LFB_029 IL_85033.2 | |
| IL_4V9A_369 | 1/AA/673:677, 1/AA/713:717 | Triple non-canonical cWW pairs | homologous IL_5J7L_361 IL_49751.4 | |
| IL_4V9A_032 | 1/AA/683:688, 1/AA/699:707 | Kink-turn | homologous IL_4LFB_031 IL_95727.1 | |
| IL_4V9A_033 | 1/AA/774:778, 1/AA/804:805 | Left turn | homologous IL_5J7L_036 IL_29346.2 | |
| IL_4V9A_034 | 1/AA/779:783, 1/AA/799:803 | tSH-tHW-tHS | homologous IL_5J7L_037 IL_17136.7 | |
| IL_4V9A_035 | 1/AA/887:894, 1/AA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 IL_41756.4 | |
| IL_4V9A_036 | 1/AA/922:923, 1/AA/1393:1395 | Single bulged A | homologous IL_5J7L_039 IL_31462.7 | |
| IL_4V9A_037 | 1/AA/925:927, 1/AA/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_00225.14 | |
| IL_4V9A_038 | 1/AA/933:935, 1/AA/1380:1384 | Minor groove platform | homologous IL_4LFB_037 IL_47078.3 | |
| IL_4V9A_039 | 1/AA/953:954, 1/AA/1226:1228 | Minor groove platform | homologous IL_4LFB_038 IL_51454.3 | |
| IL_4V9A_370 | 1/AA/993:997, 1/AA/1044:1045 | Minor groove platform | geometric IL_4LFB_039 IL_47078.3 | |
| IL_4V9A_042 | 1/AA/1048:1050, 1/AA/1208:1209 | Single bulged U | homologous IL_4LFB_042 IL_89505.4 | |
| IL_4V9A_043 | 1/AA/1052:1056, 1/AA/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_76319.5 | |
| IL_4V9A_044 | 1/AA/1057:1058, 1/AA/1199:1203 | Minor groove platform | homologous IL_5J7L_048 IL_95583.2 | |
| IL_4V9A_045 | 1/AA/1060:1061, 1/AA/1195:1197 | Single bulged U | geometric IL_6CZR_156 NA | |
| IL_4V9A_046 | 1/AA/1061:1063, 1/AA/1193:1195 | Isolated non-canonical cWW pair | homologous IL_4LFB_047 IL_28037.2 | |
| IL_4V9A_047 | 1/AA/1122:1128, 1/AA/1143:1151 | No text annotation | ||
| IL_4V9A_400 | 1/AA/1124:1132, 1/AA/1142:1149 | No text annotation | ||
| IL_4V9A_048 | 1/AA/1128:1132, 1/AA/1142:1143 | Minor groove platform | homologous IL_4LFB_049 IL_15052.4 | |
| IL_4V9A_049 | 1/AA/1247:1253, 1/AA/1284:1290 | No text annotation | homologous IL_4LFB_051 IL_09129.2 | |
| IL_4V9A_050 | 1/AA/1255:1258, 1/AA/1277:1282 | 180 degree turn | homologous IL_4LFB_052 IL_11344.2 | |
| IL_4V9A_051 | 1/AA/1259:1260, 1/AA/1274:1276 | Not an internal loop | homologous IL_4LFB_053 NA | |
| IL_4V9A_373 | 1/AA/1259:1262, 1/AA/1273:1276 | Double sheared | homologous IL_4LFB_067 IL_09705.15 | |
| IL_4V9A_052 | 1/AA/1260:1262, 1/AA/1273:1274 | Minor groove platform | geometric IL_4LFB_054 IL_51454.3 | |
| IL_4V9A_053 | 1/AA/1303:1308, 1/AA/1329:1334 | No text annotation | homologous IL_4LFB_055 IL_85536.2 | |
| IL_4V9A_054 | 1/AA/1399:1401, 1/AA/1501:1504 | No text annotation | homologous IL_4LFB_056 IL_61438.4 | |
| IL_4V9A_055 | 1/AA/1401:1404, 1/AA/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_4V9A_056 | 1/AA/1405:1407, 1/AA/1494:1496 | Isolated non-canonical cWW pair | geometric IL_5MWI_007 NA | |
| IL_4V9A_057 | 1/AA/1407:1409, 1/AA/1491:1494 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
| IL_4V9A_058 | 1/AA/1412:1414, 1/AA/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_4V9A_059 | 1/AA/1416:1419, 1/AA/1481:1484 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_4V9A_060 | 1/AA/1431:1435, 1/AA/1466:1469 | UAA/GAN variation | geometric IL_4LFB_062 IL_77691.5 | |
| IL_4V9A_061 | 1/AA/1435:1437, 1/AA/1464:1466 | Isolated non-canonical cWW pair | homologous IL_4LFB_063 IL_87907.2 | |
| IL_4V9A_062 | 1/AA/1440:1447, 1/AA/1459:1461 | No text annotation | homologous IL_4LFB_064 IL_49061.1 | |
| IL_4V9A_064 | 1/BA/4:6, 1/BA/2897:2899 | No text annotation | ||
| IL_4V9A_065 | 1/BA/24:30, 1/BA/510:516 | Triple sheared with non-canonical cWW | homologous IL_7RQB_001 NA | |
| IL_4V9A_066 | 1/BA/36:37, 1/BA/442:444 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_4V9A_067 | 1/BA/43:44, 1/BA/434:436 | Minor groove platform | homologous IL_7RQB_003 NA | |
| IL_4V9A_068 | 1/BA/81:85, 1/BA/97:105 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_4V9A_069 | 1/BA/183:184, 1/BA/212:214 | Single stack bend | homologous IL_7RQB_005 NA | |
| IL_4V9A_070 | 1/BA/188:194, 1/BA/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_006 NA | |
| IL_4V9A_071 | 1/BA/239:245, 1/BA/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
| IL_4V9A_072 | 1/BA/270J:270K, 1/BA/270N:270P | Single bulged U | geometric IL_8VMA_002 IL_89505.4 | |
| IL_4V9A_074 | 1/BA/273:273A, 1/BA/363E:364 | Major groove platform | homologous IL_7RQB_009 NA | |
| IL_4V9A_075 | 1/BA/273F:279, 1/BA/361:363 | No text annotation | ||
| IL_4V9A_076 | 1/BA/280:284, 1/BA/357:360 | tSH-tHW | homologous IL_7RQB_011 NA | |
| IL_4V9A_077 | 1/BA/288:290, 1/BA/350:353 | Isolated tHS basepair with bulges | homologous IL_7RQB_012 NA | |
| IL_4V9A_078 | 1/BA/293:295, 1/BA/343:347 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_4V9A_080 | 1/BA/481:484, 1/BA/496:509 | No text annotation | homologous IL_7RQB_014 NA | |
| IL_4V9A_081 | 1/BA/564:566, 1/BA/575:577 | Isolated non-canonical cWW pair | geometric IL_4WF9_017 IL_07785.1 | |
| IL_4V9A_082 | 1/BA/606:609A, 1/BA/618A:622 | AAA cross-strand stack | homologous IL_4WF9_019 IL_66798.2 | |
| IL_4V9A_083 | 1/BA/672:674, 1/BA/806:808 | No text annotation | geometric IL_7RQB_017 NA | |
| IL_4V9A_084 | 1/BA/674:678, 1/BA/799:806 | tHW-tHW cross-strand stack | homologous IL_4WF9_021 IL_54041.2 | |
| IL_4V9A_085 | 1/BA/697:698, 1/BA/763:765 | Single bulged A | geometric IL_7A0S_016 IL_31462.7 | |
| IL_4V9A_086 | 1/BA/702:703, 1/BA/728:730 | Single bulged G | geometric IL_7RQB_020 NA | |
| IL_4V9A_087 | 1/BA/703:707, 1/BA/724:728 | Triple sheared | homologous IL_7RQB_021 NA | |
| IL_4V9A_088 | 1/BA/738:741, 1/BA/756:758 | Major groove platform with extra cWW | homologous IL_7RQB_022 NA | |
| IL_4V9A_089 | 1/BA/775:777, 1/BA/787:791 | Multiple bulged bases | geometric IL_7RQB_023 NA | |
| IL_4V9A_090 | 1/BA/837:838, 1/BA/940:942 | Single stack bend | homologous IL_7RQB_024 NA | |
| IL_4V9A_091 | 1/BA/844:846, 1/BA/931:934 | Intercalated cWW | geometric IL_7RQB_025 NA | |
| IL_4V9A_092 | 1/BA/846:850, 1/BA/928:931 | No text annotation | homologous IL_7RQB_026 NA | |
| IL_4V9A_093 | 1/BA/858:862, 1/BA/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7RQB_027 NA | |
| IL_4V9A_094 | 1/BA/862:863, 1/BA/913:915 | Minor groove platform | homologous IL_4WF9_032 IL_51454.3 | |
| IL_4V9A_095 | 1/BA/864:868, 1/BA/909:912 | C-loop | homologous IL_7RQB_029 NA | |
| IL_4V9A_401 | 1/BA/875:877, 1/BA/899:902 | No text annotation | homologous IL_9DFE_030 IL_90351.1 | |
| IL_4V9A_402 | 1/BA/877:879, 1/BA/898:899 | Minor groove platform | homologous IL_9DFE_031 IL_51454.3 | |
| IL_4V9A_403 | 1/BA/880:881, 1/BA/895:897 | Single bulged A | homologous IL_9DFE_032 IL_31462.7 | |
| IL_4V9A_099 | 1/BA/952:954, 1/BA/963:965 | No text annotation | homologous IL_7RQB_034 NA | |
| IL_4V9A_100 | 1/BA/994:996, 1/BA/1159:1160 | Single bulged C | homologous IL_5J7L_276 IL_61258.15 | |
| IL_4V9A_101 | 1/BA/998:1002, 1/BA/1153:1157 | UAA/GAN | homologous IL_7RQB_036 NA | |
| IL_4V9A_102 | 1/BA/1004:1011, 1/BA/1150:1151 | SSU/LSU pseudoknot | homologous IL_7RQB_037 NA | |
| IL_4V9A_103 | 1/BA/1011:1013, 1/BA/1149:1150 | Single bulged U | geometric IL_7RQB_038 NA | |
| IL_4V9A_104 | 1/BA/1018:1024, 1/BA/1140:1144 | Kink-turn related | homologous IL_4WF9_039 IL_57188.5 | |
| IL_4V9A_105 | 1/BA/1024:1030, 1/BA/1124:1140 | No text annotation | geometric IL_7RQB_040 NA | |
| IL_4V9A_106 | 1/BA/1031:1034, 1/BA/1121:1123 | Isolated non-canonical cWW pair | homologous IL_4WF9_041 IL_57744.1 | |
| IL_4V9A_404 | 1/BA/1043:1051, 1/BA/1108:1112 | Kink-turn | homologous IL_5J7L_284 IL_99692.2 | |
| IL_4V9A_405 | 1/BA/1059:1062, 1/BA/1076:1079 | No text annotation | ||
| IL_4V9A_109 | 1/BA/1196:1198, 1/BA/1247:1250 | Isolated cWS basepair | homologous IL_7RQB_045 NA | |
| IL_4V9A_110 | 1/BA/1202:1206, 1/BA/1240:1243 | No text annotation | homologous IL_7RQB_046 NA | |
| IL_4V9A_111 | 1/BA/1208:1215, 1/BA/1234:1238 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_4V9A_112 | 1/BA/1219:1221, 1/BA/1229A:1230 | Single bulged A | homologous IL_7RQB_048 NA | |
| IL_4V9A_113 | 1/BA/1262:1269, 1/BA/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_4V9A_114 | 1/BA/1310:1313, 1/BA/1603:1604 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_4V9A_115 | 1/BA/1319:1323, 1/BA/1331:1333 | C-loop | homologous IL_7RQB_051 NA | |
| IL_4V9A_116 | 1/BA/1351:1355, 1/BA/1376:1380 | UAA/GAN | homologous IL_7RQB_052 NA | |
| IL_4V9A_117 | 1/BA/1357:1361, 1/BA/1370:1374 | tSH-tHW-tHS | homologous IL_7RQB_053 NA | |
| IL_4V9A_378 | 1/BA/1415:1416, 1/BA/1582:1587 | No text annotation | homologous IL_9DFE_053 IL_00881.1 | |
| IL_4V9A_120 | 1/BA/1417:1421, 1/BA/1577:1581 | UAA/GAN | geometric IL_7RQB_055 NA | |
| IL_4V9A_121 | 1/BA/1433:1435, 1/BA/1557:1560 | Isolated tWW turn | homologous IL_7RQB_056 NA | |
| IL_4V9A_122 | 1/BA/1437:1440, 1/BA/1551:1555 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_4V9A_123 | 1/BA/1448:1449A, 1/BA/1462:1463 | Single stack bend | homologous IL_7RQB_058 NA | |
| IL_4V9A_124 | 1/BA/1450:1451, 1/BA/1459:1461 | Single bulged A | geometric IL_7RQB_059 NA | |
| IL_4V9A_125 | 1/BA/1469:1473, 1/BA/1520:1523 | UAA/GAN variation | homologous IL_7RQB_060 NA | |
| IL_4V9A_126 | 1/BA/1482:1483, 1/BA/1506:1512 | No text annotation | homologous IL_7RQB_061 NA | |
| IL_4V9A_127 | 1/BA/1489:1491, 1/BA/1499:1500 | Single bulged A | homologous IL_7RQB_062 NA | |
| IL_4V9A_128 | 1/BA/1526:1530, 1/BA/1541:1546 | No text annotation | homologous IL_7RQB_063 NA | |
| IL_4V9A_129 | 1/BA/1651:1656, 1/BA/2004:2006 | No text annotation | homologous IL_7RQB_064 NA | |
| IL_4V9A_130 | 1/BA/1663:1665, 1/BA/1995:1997 | Isolated tWW turn | homologous IL_5J7L_305 IL_67095.2 | |
| IL_4V9A_131 | 1/BA/1666:1669, 1/BA/1993:1994 | Major groove platform; stack outside cWW | geometric IL_7RQB_066 NA | |
| IL_4V9A_379 | 1/BA/1666:1674, 1/BA/1990:1994 | No text annotation | homologous IL_9DFE_066 IL_22854.4 | |
| IL_4V9A_132 | 1/BA/1669:1674, 1/BA/1990:1993 | Intercalated tWH | homologous IL_7RQB_067 NA | |
| IL_4V9A_133 | 1/BA/1686:1691, 1/BA/1696:1702 | tSH-tSH-tHH-tHS | homologous IL_7RQB_068 NA | |
| IL_4V9A_134 | 1/BA/1770:1771, 1/BA/1980:1982 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_4V9A_135 | 1/BA/1798:1804, 1/BA/1813:1821 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_4V9A_136 | 1/BA/1837:1840, 1/BA/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_7A0S_066 IL_95583.2 | |
| IL_4V9A_137 | 1/BA/1841:1842, 1/BA/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 IL_82107.5 | |
| IL_4V9A_138 | 1/BA/1846:1849, 1/BA/1893:1894 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_4V9A_139 | 1/BA/1851:1855, 1/BA/1887:1891 | UAA/GAN with extra stack | homologous IL_4WF9_073 IL_89021.2 | |
| IL_4V9A_140 | 1/BA/1856:1860, 1/BA/1882:1886 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_4V9A_141 | 1/BA/1933:1934, 1/BA/1964:1967 | Bulged stacked bases | geometric IL_7RQB_076 NA | |
| IL_4V9A_142 | 1/BA/1934:1945, 1/BA/1961:1964 | No text annotation | homologous IL_7A0S_072 IL_04332.3 | |
| IL_4V9A_143 | 1/BA/2050:2052, 1/BA/2617:2618 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_4V9A_144 | 1/BA/2054:2057, 1/BA/2611:2615 | No text annotation | homologous IL_9DFE_079 IL_70335.1 | |
| IL_4V9A_145 | 1/BA/2067:2069, 1/BA/2442:2443 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_4V9A_146 | 1/BA/2070:2071, 1/BA/2438:2441 | Minor groove platform | homologous IL_4WF9_081 IL_51454.3 | |
| IL_4V9A_147 | 1/BA/2081:2083, 1/BA/2236:2239 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_4V9A_148 | 1/BA/2085:2087, 1/BA/2232:2234 | No text annotation | homologous IL_7RQB_083 NA | |
| IL_4V9A_151 | 1/BA/2107:2121, 1/BA/2177:2182 | No text annotation | ||
| IL_4V9A_380 | 1/BA/2107:2127, 1/BA/2161:2182 | No text annotation | ||
| IL_4V9A_152 | 1/BA/2121:2127, 1/BA/2161:2177 | No text annotation | ||
| IL_4V9A_153 | 1/BA/2128:2137, 1/BA/2155:2160 | No text annotation | ||
| IL_4V9A_381 | 1/BA/2138:2139, 1/BA/2152:2154 | Single stack bend | geometric IL_8C3A_091 NA | |
| IL_4V9A_155 | 1/BA/2297:2299, 1/BA/2317:2321 | Isolated tHS basepair with bulges | homologous IL_7RQB_088 NA | |
| IL_4V9A_156 | 1/BA/2350:2353, 1/BA/2364:2367 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_4V9A_157 | 1/BA/2401:2403, 1/BA/2414:2415 | Multiple bulged bases | geometric IL_6IV9_001 IL_82107.5 | |
| IL_4V9A_158 | 1/BA/2453:2454, 1/BA/2498:2500 | Single stack bend | geometric IL_7RQB_091 NA | |
| IL_4V9A_159 | 1/BA/2454:2455, 1/BA/2496:2498 | Major groove platform | homologous IL_7RQB_092 NA | |
| IL_4V9A_382 | 1/BA/2457:2459, 1/BA/2493:2494 | Major groove platform | homologous IL_9DFE_093 IL_48076.6 | |
| IL_4V9A_161 | 1/BA/2459:2461, 1/BA/2489:2493 | Major groove minor groove platform with extra cWW | geometric IL_7RQB_094 NA | |
| IL_4V9A_162 | 1/BA/2466:2470, 1/BA/2480:2484 | Double sheared with non-canonical cWW | homologous IL_7A0S_087 IL_17948.2 | |
| IL_4V9A_163 | 1/BA/2507:2508, 1/BA/2580:2582 | Major groove platform | homologous IL_7RQB_096 NA | |
| IL_4V9A_164 | 1/BA/2510:2512, 1/BA/2574:2578 | Isolated non-canonical cWW with bulges | geometric IL_7RQB_097 NA | |
| IL_4V9A_165 | 1/BA/2512:2513, 1/BA/2571:2574 | Multiple bulged bases | homologous IL_7RQB_098 NA | |
| IL_4V9A_166 | 1/BA/2522:2523, 1/BA/2540:2543 | Major groove platform with intercalation | homologous IL_7RQB_099 NA | |
| IL_4V9A_168 | 1/BA/2591:2592, 1/BA/2601:2603 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_4V9A_169 | 1/BA/2636:2640, 1/BA/2774:2782 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_4V9A_170 | 1/BA/2652:2658, 1/BA/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_7RQB_103 NA | |
| IL_4V9A_171 | 1/BA/2680:2684, 1/BA/2725:2727 | C-loop | homologous IL_7RQB_104 NA | |
| IL_4V9A_172 | 1/BA/2687:2691, 1/BA/2718:2722 | No text annotation | homologous IL_7RQB_105 NA | |
| IL_4V9A_173 | 1/BA/2695:2696, 1/BA/2711:2714 | Multiple bulged bases | homologous IL_7RQB_106 NA | |
| IL_4V9A_174 | 1/BA/2737:2742, 1/BA/2762:2767 | UAA/GAN with extra cWW | homologous IL_7RQB_107 NA | |
| IL_4V9A_175 | 1/BA/2838:2839, 1/BA/2878:2880 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_4V9A_176 | 1/BA/2843:2846, 1/BA/2870:2874 | No text annotation | homologous IL_7RQB_109 NA | |
| IL_4V9A_177 | 1/BA/2847:2852, 1/BA/2865:2869 | tHS double platform | homologous IL_7RQB_110 NA | |
| IL_4V9A_178 | 1/BB/17:18, 1/BB/65:67 | Major groove intercalation | homologous IL_7RQB_111 NA | |
| IL_4V9A_179 | 1/BB/23:28, 1/BB/56:60 | No text annotation | homologous IL_7RQB_112 NA | |
| IL_4V9A_180 | 1/BB/30:31, 1/BB/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_7RQB_113 NA | |
| IL_4V9A_181 | 1/BB/34:38, 1/BB/44:48 | Symmetric double minor groove platform | geometric IL_7RQB_114 NA | |
| IL_4V9A_182 | 1/BB/71:79, 1/BB/97:105 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA | |
| IL_4V9A_406 | 1/CA/30:32, 1/CA/552:553 | Single bulged G | homologous IL_4LFB_001 IL_00225.14 | |
| IL_4V9A_185 | 1/CA/44:45, 1/CA/396:398 | Single bulged A | homologous IL_4LFB_002 IL_31462.7 | |
| IL_4V9A_186 | 1/CA/47:52, 1/CA/359:361 | No text annotation | homologous IL_4LFB_003 IL_14177.2 | |
| IL_4V9A_187 | 1/CA/54:56, 1/CA/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_51454.3 | |
| IL_4V9A_188 | 1/CA/63:66, 1/CA/103:104 | Multiple bulged bases | homologous IL_6CZR_117 NA | |
| IL_4V9A_189 | 1/CA/67:69, 1/CA/99:102 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_87907.2 | |
| IL_4V9A_190 | 1/CA/129:131, 1/CA/231:232 | Multiple bulged bases | homologous IL_4LFB_007 IL_33761.2 | |
| IL_4V9A_191 | 1/CA/132:136, 1/CA/227:230 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_4V9A_192 | 1/CA/148:153, 1/CA/168:174 | tWH-tWH-tHW-tHW | homologous IL_4LFB_009 IL_12745.1 | |
| IL_4V9A_383 | 1/CA/186:186, 1/CA/191:191 | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_87907.2 | |
| IL_4V9A_194 | 1/CA/242:247, 1/CA/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.3 | |
| IL_4V9A_195 | 1/CA/249:252, 1/CA/274:275 | No text annotation | homologous IL_5J7L_015 IL_47074.2 | |
| IL_4V9A_196 | 1/CA/292:293, 1/CA/304:308 | C-loop | homologous IL_4LFB_013 IL_03109.3 | |
| IL_4V9A_197 | 1/CA/367:369, 1/CA/392:393 | Single bulged U | homologous IL_5J7L_017 IL_89505.4 | |
| IL_4V9A_198 | 1/CA/371:375, 1/CA/389:390 | C-loop | geometric IL_5J7L_018 IL_03109.3 | |
| IL_4V9A_199 | 1/CA/375:376, 1/CA/387:389 | Single bulged G | homologous IL_4LFB_016 IL_00225.14 | |
| IL_4V9A_201 | 1/CA/409:416, 1/CA/427:433 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
| IL_4V9A_202 | 1/CA/446:450, 1/CA/483:488 | 6x5 Sarcin-Ricin; G-bulge | geometric IL_6CZR_130 NA | |
| IL_4V9A_203 | 1/CA/450:455, 1/CA/477:483 | No text annotation | homologous IL_4LFB_019 IL_31561.1 | |
| IL_4V9A_204 | 1/CA/504:511, 1/CA/540:541 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_41203.4 | |
| IL_4V9A_205 | 1/CA/515:521, 1/CA/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_4V9A_206 | 1/CA/569:575, 1/CA/880:881 | No text annotation | homologous IL_5J7L_026 IL_38186.6 | |
| IL_4V9A_207 | 1/CA/580:584, 1/CA/757:761 | tSH-tHW-tHS | homologous IL_4LFB_023 IL_17136.7 | |
| IL_4V9A_208 | 1/CA/594:596, 1/CA/644:645 | Major groove platform | homologous IL_4LFB_024 IL_48076.6 | |
| IL_4V9A_209 | 1/CA/597:598, 1/CA/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 IL_68140.4 | |
| IL_4V9A_210 | 1/CA/605:612, 1/CA/628:633 | No text annotation | homologous IL_5J7L_030 IL_78349.3 | |
| IL_4V9A_211 | 1/CA/654:655, 1/CA/751:754 | Major groove platform; stack outside cWW | homologous IL_4LFB_027 IL_50694.7 | |
| IL_4V9A_212 | 1/CA/657:658, 1/CA/747:749 | Major groove platform | homologous IL_4LFB_028 IL_48076.6 | |
| IL_4V9A_213 | 1/CA/662:666, 1/CA/740:743 | Tandem non-canonical cWW pairs | homologous IL_4LFB_029 IL_85033.2 | |
| IL_4V9A_385 | 1/CA/673:677, 1/CA/713:717 | Triple non-canonical cWW pairs | homologous IL_5J7L_361 IL_49751.4 | |
| IL_4V9A_215 | 1/CA/683:688, 1/CA/699:707 | Kink-turn | homologous IL_4LFB_031 IL_95727.1 | |
| IL_4V9A_216 | 1/CA/774:778, 1/CA/804:805 | Left turn | homologous IL_5J7L_036 IL_29346.2 | |
| IL_4V9A_217 | 1/CA/779:783, 1/CA/799:803 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_17136.7 | |
| IL_4V9A_219 | 1/CA/887:894, 1/CA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_41756.4 | |
| IL_4V9A_220 | 1/CA/922:923, 1/CA/1393:1395 | Single bulged A | homologous IL_4LFB_035 IL_31462.7 | |
| IL_4V9A_221 | 1/CA/925:927, 1/CA/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_00225.14 | |
| IL_4V9A_222 | 1/CA/933:935, 1/CA/1380:1384 | Minor groove platform | homologous IL_4LFB_037 IL_47078.3 | |
| IL_4V9A_407 | 1/CA/953:954, 1/CA/1226:1228 | Minor groove platform | homologous IL_4LFB_038 IL_51454.3 | |
| IL_4V9A_225 | 1/CA/1048:1050, 1/CA/1208:1209 | Single bulged U | homologous IL_4LFB_042 IL_89505.4 | |
| IL_4V9A_386 | 1/CA/1052:1056, 1/CA/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_76319.5 | |
| IL_4V9A_227 | 1/CA/1057:1058, 1/CA/1199:1203 | Minor groove platform | homologous IL_6CZR_155 NA | |
| IL_4V9A_228 | 1/CA/1060:1061, 1/CA/1195:1197 | Single bulged U | geometric IL_4LFB_046 IL_89505.4 | |
| IL_4V9A_229 | 1/CA/1061:1063, 1/CA/1193:1195 | Isolated non-canonical cWW pair | homologous IL_4LFB_047 IL_28037.2 | |
| IL_4V9A_231 | 1/CA/1124:1132, 1/CA/1142:1149 | No text annotation | ||
| IL_4V9A_232 | 1/CA/1247:1253, 1/CA/1284:1290 | No text annotation | homologous IL_4LFB_051 IL_09129.2 | |
| IL_4V9A_233 | 1/CA/1255:1258, 1/CA/1277:1282 | 180 degree turn | homologous IL_4LFB_052 IL_11344.2 | |
| IL_4V9A_234 | 1/CA/1259:1260, 1/CA/1274:1276 | Not an internal loop | homologous IL_4LFB_053 NA | |
| IL_4V9A_235 | 1/CA/1260:1262, 1/CA/1273:1274 | Minor groove platform | geometric IL_4LFB_054 IL_51454.3 | |
| IL_4V9A_236 | 1/CA/1303:1308, 1/CA/1329:1334 | No text annotation | homologous IL_4LFB_055 IL_85536.2 | |
| IL_4V9A_237 | 1/CA/1399:1401, 1/CA/1501:1504 | No text annotation | geometric IL_4V88_463 NA | |
| IL_4V9A_238 | 1/CA/1401:1404, 1/CA/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_4V9A_239 | 1/CA/1405:1407, 1/CA/1494:1496 | Isolated non-canonical cWW pair | geometric IL_5MWI_007 NA | |
| IL_4V9A_240 | 1/CA/1407:1409, 1/CA/1491:1494 | No text annotation | geometric IL_4ZC7_002 NA | |
| IL_4V9A_241 | 1/CA/1412:1414, 1/CA/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_4V9A_242 | 1/CA/1416:1419, 1/CA/1481:1484 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_4V9A_243 | 1/CA/1431:1435, 1/CA/1466:1469 | UAA/GAN variation | homologous IL_4LFB_062 IL_77691.5 | |
| IL_4V9A_244 | 1/CA/1435:1437, 1/CA/1464:1466 | Isolated non-canonical cWW pair | geometric IL_4LFB_063 IL_87907.2 | |
| IL_4V9A_245 | 1/CA/1440:1447, 1/CA/1459:1461 | No text annotation | homologous IL_4LFB_064 IL_49061.1 | |
| IL_4V9A_247 | 1/DA/24:30, 1/DA/510:516 | Triple sheared with non-canonical cWW | homologous IL_7RQB_001 NA | |
| IL_4V9A_248 | 1/DA/36:37, 1/DA/442:444 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_4V9A_408 | 1/DA/43:44, 1/DA/434:436 | Minor groove platform | homologous IL_9DFE_348 IL_51454.3 | |
| IL_4V9A_250 | 1/DA/81:85, 1/DA/97:105 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_4V9A_252 | 1/DA/183:184, 1/DA/212:214 | Single stack bend | homologous IL_4WF9_007 IL_90729.1 | |
| IL_4V9A_253 | 1/DA/188:194, 1/DA/201:208 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7RQB_006 NA | |
| IL_4V9A_254 | 1/DA/239:245, 1/DA/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
| IL_4V9A_256 | 1/DA/273:273A, 1/DA/363E:364 | Major groove platform | homologous IL_7RQB_009 NA | |
| IL_4V9A_409 | 1/DA/273F:278, 1/DA/362:363 | No text annotation | ||
| IL_4V9A_259 | 1/DA/280:284, 1/DA/357:360 | tSH-tHW | homologous IL_7RQB_011 NA | |
| IL_4V9A_260 | 1/DA/288:290, 1/DA/350:353 | Isolated tHS basepair with bulges | homologous IL_7RQB_012 NA | |
| IL_4V9A_261 | 1/DA/293:295, 1/DA/343:347 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_4V9A_262 | 1/DA/481:484, 1/DA/496:509 | No text annotation | homologous IL_7RQB_014 NA | |
| IL_4V9A_264 | 1/DA/564:566, 1/DA/575:577 | Isolated non-canonical cWW pair | geometric IL_4WF9_017 IL_07785.1 | |
| IL_4V9A_265 | 1/DA/606:609A, 1/DA/618A:622 | AAA cross-strand stack | homologous IL_4WF9_019 IL_66798.2 | |
| IL_4V9A_267 | 1/DA/672:674, 1/DA/806:808 | No text annotation | homologous IL_7RQB_017 NA | |
| IL_4V9A_268 | 1/DA/674:678, 1/DA/799:806 | tHW-tHW cross-strand stack | geometric IL_4WF9_021 IL_54041.2 | |
| IL_4V9A_269 | 1/DA/697:698, 1/DA/763:765 | Single bulged A | homologous IL_7RQB_019 NA | |
| IL_4V9A_270 | 1/DA/702:703, 1/DA/728:730 | Single bulged G | homologous IL_7RQB_020 NA | |
| IL_4V9A_271 | 1/DA/703:707, 1/DA/724:728 | Triple sheared | geometric IL_7RQB_021 NA | |
| IL_4V9A_272 | 1/DA/738:741, 1/DA/756:758 | Major groove platform with extra cWW | homologous IL_7RQB_022 NA | |
| IL_4V9A_273 | 1/DA/775:777, 1/DA/787:791 | Multiple bulged bases | geometric IL_7RQB_023 NA | |
| IL_4V9A_274 | 1/DA/837:838, 1/DA/940:942 | Single stack bend | homologous IL_4WF9_028 IL_90729.1 | |
| IL_4V9A_275 | 1/DA/844:846, 1/DA/931:934 | Intercalated cWW | homologous IL_7RQB_025 NA | |
| IL_4V9A_389 | 1/DA/844:850, 1/DA/928:934 | No text annotation | homologous IL_9DFE_024 IL_68243.1 | |
| IL_4V9A_276 | 1/DA/846:850, 1/DA/928:931 | No text annotation | geometric IL_7RQB_026 NA | |
| IL_4V9A_277 | 1/DA/858:862, 1/DA/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_7RQB_027 NA | |
| IL_4V9A_278 | 1/DA/862:863, 1/DA/913:915 | Minor groove platform | geometric IL_7A0S_028 IL_51454.3 | |
| IL_4V9A_279 | 1/DA/864:868, 1/DA/909:912 | C-loop | homologous IL_7RQB_029 NA | |
| IL_4V9A_281 | 1/DA/875:879, 1/DA/898:902 | Double sheared with non-canonical cWW | homologous IL_5J7L_274 IL_17948.2 | |
| IL_4V9A_282 | 1/DA/880:882, 1/DA/894:897 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
| IL_4V9A_283 | 1/DA/952:954, 1/DA/963:965 | No text annotation | homologous IL_7RQB_034 NA | |
| IL_4V9A_284 | 1/DA/994:996, 1/DA/1159:1160 | Single bulged C | homologous IL_5J7L_276 IL_61258.15 | |
| IL_4V9A_285 | 1/DA/998:1002, 1/DA/1153:1157 | UAA/GAN | homologous IL_7RQB_036 NA | |
| IL_4V9A_286 | 1/DA/1004:1013, 1/DA/1149:1151 | No text annotation | ||
| IL_4V9A_287 | 1/DA/1018:1024, 1/DA/1140:1144 | Kink-turn related | homologous IL_4WF9_039 IL_57188.5 | |
| IL_4V9A_288 | 1/DA/1024:1030, 1/DA/1124:1140 | No text annotation | geometric IL_7RQB_040 NA | |
| IL_4V9A_289 | 1/DA/1031:1034, 1/DA/1121:1123 | Isolated non-canonical cWW pair | homologous IL_4WF9_041 IL_57744.1 | |
| IL_4V9A_290 | 1/DA/1043:1051, 1/DA/1108:1112 | Kink-turn | homologous IL_7RQB_042 NA | |
| IL_4V9A_291 | 1/DA/1059:1063, 1/DA/1075:1079 | No text annotation | ||
| IL_4V9A_292 | 1/DA/1196:1198, 1/DA/1247:1250 | Isolated cWS basepair | homologous IL_7RQB_045 NA | |
| IL_4V9A_293 | 1/DA/1202:1206, 1/DA/1240:1243 | No text annotation | homologous IL_7RQB_046 NA | |
| IL_4V9A_294 | 1/DA/1208:1215, 1/DA/1234:1238 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_4V9A_295 | 1/DA/1219:1221, 1/DA/1229A:1230 | Single bulged A | homologous IL_7RQB_048 NA | |
| IL_4V9A_296 | 1/DA/1262:1269, 1/DA/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_4V9A_297 | 1/DA/1310:1313, 1/DA/1603:1604 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_4V9A_392 | 1/DA/1319:1323, 1/DA/1331:1333 | C-loop | homologous IL_5J7L_291 IL_63596.11 | |
| IL_4V9A_299 | 1/DA/1351:1355, 1/DA/1376:1380 | UAA/GAN | homologous IL_7RQB_052 NA | |
| IL_4V9A_300 | 1/DA/1357:1361, 1/DA/1370:1374 | tSH-tHW-tHS | homologous IL_4WF9_052 IL_17136.7 | |
| IL_4V9A_393 | 1/DA/1415:1416, 1/DA/1582:1587 | No text annotation | homologous IL_9DFE_053 IL_00881.1 | |
| IL_4V9A_303 | 1/DA/1417:1421, 1/DA/1577:1581 | UAA/GAN | geometric IL_5J7L_295 IL_38507.2 | |
| IL_4V9A_394 | 1/DA/1424:1429, 1/DA/1564:1574 | No text annotation | ||
| IL_4V9A_304 | 1/DA/1433:1435, 1/DA/1557:1560 | Isolated tWW turn | homologous IL_7RQB_056 NA | |
| IL_4V9A_305 | 1/DA/1437:1440, 1/DA/1551:1555 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_4V9A_306 | 1/DA/1448:1449A, 1/DA/1462:1463 | Single stack bend | homologous IL_7RQB_058 NA | |
| IL_4V9A_307 | 1/DA/1450:1451, 1/DA/1459:1461 | Single bulged A | homologous IL_7RQB_059 NA | |
| IL_4V9A_308 | 1/DA/1469:1473, 1/DA/1520:1523 | UAA/GAN variation | homologous IL_7RQB_060 NA | |
| IL_4V9A_309 | 1/DA/1482:1483, 1/DA/1506:1512 | No text annotation | homologous IL_7RQB_061 NA | |
| IL_4V9A_310 | 1/DA/1489:1491, 1/DA/1499:1500 | Single bulged A | homologous IL_7RQB_062 NA | |
| IL_4V9A_311 | 1/DA/1526:1530, 1/DA/1541:1546 | No text annotation | homologous IL_7RQB_063 NA | |
| IL_4V9A_312 | 1/DA/1651:1656, 1/DA/2004:2006 | No text annotation | homologous IL_7RQB_064 NA | |
| IL_4V9A_313 | 1/DA/1663:1665, 1/DA/1995:1997 | Isolated tWW turn | homologous IL_7A0S_060 IL_67095.2 | |
| IL_4V9A_314 | 1/DA/1666:1669, 1/DA/1993:1994 | Major groove platform; stack outside cWW | geometric IL_7RQB_066 NA | |
| IL_4V9A_396 | 1/DA/1666:1674, 1/DA/1990:1994 | No text annotation | homologous IL_9DFE_066 IL_22854.4 | |
| IL_4V9A_315 | 1/DA/1669:1674, 1/DA/1990:1993 | Intercalated tWH | homologous IL_7RQB_067 NA | |
| IL_4V9A_316 | 1/DA/1686:1691, 1/DA/1696:1702 | tSH-tSH-tHH-tHS | homologous IL_7RQB_068 NA | |
| IL_4V9A_317 | 1/DA/1770:1771, 1/DA/1980:1982 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_4V9A_318 | 1/DA/1798:1804, 1/DA/1813:1821 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_4V9A_319 | 1/DA/1837:1840, 1/DA/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_7A0S_066 IL_95583.2 | |
| IL_4V9A_320 | 1/DA/1841:1842, 1/DA/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 IL_82107.5 | |
| IL_4V9A_321 | 1/DA/1846:1849, 1/DA/1893:1894 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_4V9A_322 | 1/DA/1851:1855, 1/DA/1887:1891 | UAA/GAN with extra stack | homologous IL_7RQB_074 NA | |
| IL_4V9A_323 | 1/DA/1856:1860, 1/DA/1882:1886 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_4V9A_324 | 1/DA/1933:1934, 1/DA/1964:1967 | Bulged stacked bases | homologous IL_7RQB_076 NA | |
| IL_4V9A_325 | 1/DA/1934:1945, 1/DA/1961:1964 | No text annotation | geometric IL_7A0S_072 IL_04332.3 | |
| IL_4V9A_326 | 1/DA/2050:2052, 1/DA/2617:2618 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_4V9A_327 | 1/DA/2054:2057, 1/DA/2611:2615 | No text annotation | homologous IL_9DFE_079 IL_70335.1 | |
| IL_4V9A_328 | 1/DA/2067:2069, 1/DA/2442:2443 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_4V9A_329 | 1/DA/2070:2071, 1/DA/2438:2441 | Minor groove platform | homologous IL_4WF9_081 IL_51454.3 | |
| IL_4V9A_330 | 1/DA/2081:2083, 1/DA/2236:2239 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_4V9A_331 | 1/DA/2085:2087, 1/DA/2232:2234 | No text annotation | homologous IL_7RQB_083 NA | |
| IL_4V9A_334 | 1/DA/2105:2110, 1/DA/2179:2184 | No text annotation | ||
| IL_4V9A_410 | 1/DA/2107:2138, 1/DA/2153:2182 | No text annotation | ||
| IL_4V9A_335 | 1/DA/2110:2129, 1/DA/2160:2179 | No text annotation | ||
| IL_4V9A_336 | 1/DA/2129:2139, 1/DA/2152:2160 | No text annotation | ||
| IL_4V9A_337 | 1/DA/2297:2299, 1/DA/2317:2321 | Isolated tHS basepair with bulges | geometric IL_7RQB_088 NA | |
| IL_4V9A_338 | 1/DA/2350:2353, 1/DA/2364:2367 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_4V9A_411 | 1/DA/2401:2403, 1/DA/2414:2415 | Minor groove platform | geometric IL_8P9A_267 IL_51454.3 | |
| IL_4V9A_340 | 1/DA/2453:2454, 1/DA/2498:2500 | Single stack bend | homologous IL_7RQB_091 NA | |
| IL_4V9A_341 | 1/DA/2454:2455, 1/DA/2496:2498 | Major groove platform | geometric IL_7RQB_092 NA | |
| IL_4V9A_342 | 1/DA/2457:2459, 1/DA/2493:2494 | Major groove platform | homologous IL_4WF9_091 IL_48076.6 | |
| IL_4V9A_343 | 1/DA/2459:2461, 1/DA/2489:2493 | Major groove minor groove platform with extra cWW | geometric IL_7RQB_094 NA | |
| IL_4V9A_344 | 1/DA/2466:2470, 1/DA/2480:2484 | Triple sheared | homologous IL_7RQB_095 NA | |
| IL_4V9A_345 | 1/DA/2507:2508, 1/DA/2580:2582 | Major groove platform | homologous IL_7RQB_096 NA | |
| IL_4V9A_346 | 1/DA/2510:2512, 1/DA/2574:2578 | Isolated non-canonical cWW with bulges | homologous IL_7RQB_097 NA | |
| IL_4V9A_347 | 1/DA/2512:2513, 1/DA/2571:2574 | Multiple bulged bases | geometric IL_7RQB_098 NA | |
| IL_4V9A_348 | 1/DA/2522:2523, 1/DA/2540:2543 | Major groove platform with intercalation | homologous IL_7RQB_099 NA | |
| IL_4V9A_350 | 1/DA/2591:2592, 1/DA/2601:2603 | Single bulged A | homologous IL_5J7L_344 IL_31462.7 | |
| IL_4V9A_351 | 1/DA/2636:2640, 1/DA/2774:2782 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_4V9A_352 | 1/DA/2652:2658, 1/DA/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_7RQB_103 NA | |
| IL_4V9A_353 | 1/DA/2680:2684, 1/DA/2725:2727 | C-loop | homologous IL_7RQB_104 NA | |
| IL_4V9A_354 | 1/DA/2687:2691, 1/DA/2718:2722 | No text annotation | homologous IL_7RQB_105 NA | |
| IL_4V9A_355 | 1/DA/2695:2696, 1/DA/2711:2714 | Multiple bulged bases | homologous IL_7RQB_106 NA | |
| IL_4V9A_356 | 1/DA/2737:2742, 1/DA/2762:2767 | UAA/GAN with extra cWW | homologous IL_7RQB_107 NA | |
| IL_4V9A_357 | 1/DA/2838:2839, 1/DA/2878:2880 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_4V9A_358 | 1/DA/2843:2846, 1/DA/2870:2874 | No text annotation | homologous IL_7RQB_109 NA | |
| IL_4V9A_359 | 1/DA/2847:2852, 1/DA/2865:2869 | tHS double platform | homologous IL_7RQB_110 NA | |
| IL_4V9A_361 | 1/DB/17:18, 1/DB/65:67 | Major groove intercalation | homologous IL_4V9F_101 IL_31462.7 | |
| IL_4V9A_362 | 1/DB/23:28, 1/DB/56:60 | No text annotation | homologous IL_7RQB_112 NA | |
| IL_4V9A_412 | 1/DB/30:31, 1/DB/51:54 | No text annotation | homologous IL_9DFE_112 IL_68140.4 | |
| IL_4V9A_364 | 1/DB/34:38, 1/DB/44:48 | Symmetric double minor groove platform | homologous IL_7RQB_114 NA | |
| IL_4V9A_365 | 1/DB/71:79, 1/DB/97:105 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V9A_007 | Tandem non-canonical cWW pairs | ||
| IL_4V9A_011 | No text annotation | ||
| IL_4V9A_020 | No text annotation | ||
| IL_4V9A_031 | No text annotation | ||
| IL_4V9A_040 | No text annotation | ||
| IL_4V9A_041 | Isolated non-canonical cWW pair | ||
| IL_4V9A_371 | No text annotation | ||
| IL_4V9A_372 | No text annotation | ||
| IL_4V9A_063 | No text annotation | ||
| IL_4V9A_073 | No text annotation | ||
| IL_4V9A_374 | No text annotation | ||
| IL_4V9A_375 | No text annotation | ||
| IL_4V9A_079 | No text annotation | ||
| IL_4V9A_096 | Isolated cWS basepair | ||
| IL_4V9A_376 | Double sheared with non-canonical cWW | ||
| IL_4V9A_097 | No text annotation | ||
| IL_4V9A_098 | Other IL | ||
| IL_4V9A_107 | No text annotation | ||
| IL_4V9A_377 | No text annotation | ||
| IL_4V9A_108 | No text annotation | ||
| IL_4V9A_118 | No text annotation | ||
| IL_4V9A_119 | No text annotation | ||
| IL_4V9A_149 | No text annotation | ||
| IL_4V9A_150 | Isolated non-canonical cWW pair | ||
| IL_4V9A_154 | No text annotation | ||
| IL_4V9A_160 | Major groove platform with extra pair | ||
| IL_4V9A_167 | Isolated non-canonical cWW pair | ||
| IL_4V9A_183 | Isolated non-canonical cWW pair | ||
| IL_4V9A_184 | Isolated non-canonical cWW pair | ||
| IL_4V9A_193 | No text annotation | ||
| IL_4V9A_200 | Isolated cWH basepair | ||
| IL_4V9A_384 | Major groove platform with extra cWW | ||
| IL_4V9A_214 | No text annotation | ||
| IL_4V9A_218 | Isolated non-canonical cWW pair | ||
| IL_4V9A_223 | Minor groove platform with extra cWW | ||
| IL_4V9A_224 | Isolated non-canonical cWW pair | ||
| IL_4V9A_226 | Tandem non-canonical cWW pairs | ||
| IL_4V9A_387 | Isolated non-canonical cWW pair | ||
| IL_4V9A_230 | Tandem non-canonical cWW pairs | ||
| IL_4V9A_388 | No text annotation | ||
| IL_4V9A_246 | Isolated non-canonical cWW pair | ||
| IL_4V9A_249 | Major groove platform with extra cWW | ||
| IL_4V9A_251 | No text annotation | ||
| IL_4V9A_255 | No text annotation | ||
| IL_4V9A_257 | Isolated non-canonical cWW pair | ||
| IL_4V9A_258 | No text annotation | ||
| IL_4V9A_263 | Isolated non-canonical cWW pair | ||
| IL_4V9A_266 | Isolated non-canonical cWW pair | ||
| IL_4V9A_280 | Tandem non-canonical cWW pairs | ||
| IL_4V9A_390 | No text annotation | ||
| IL_4V9A_391 | Double sheared with non-canonical cWW | ||
| IL_4V9A_298 | C-loop with extra cWW pair | ||
| IL_4V9A_301 | Isolated non-canonical cWW pair | ||
| IL_4V9A_302 | No text annotation | ||
| IL_4V9A_395 | Isolated non-canonical cWW with bulges | ||
| IL_4V9A_332 | Other IL | ||
| IL_4V9A_397 | Triple non-canonical cWW pairs | ||
| IL_4V9A_333 | Self complementary | ||
| IL_4V9A_398 | No text annotation | ||
| IL_4V9A_339 | No text annotation | ||
| IL_4V9A_399 | No text annotation | ||
| IL_4V9A_349 | Isolated non-canonical cWW pair | ||
| IL_4V9A_360 | Isolated cWH basepair | ||
| IL_4V9A_363 | Major groove minor groove platform with extra cWW | ||
| IL_4V9A_366 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4V9A_036 | 1/AA/46:47, 1/AA/361:367, 1/AA/393:395 | No text annotation | geometric J3_4LFB_010 J3_67856.4 | |
| J3_4V9A_037 | 1/AA/46:52, 1/AA/359:367, 1/AA/393:395 | No text annotation | homologous J3_4LFB_014 J3_46317.4 | |
| J3_4V9A_038 | 1/AA/586:588, 1/AA/651:655, 1/AA/751:755 | No text annotation | homologous J3_4LFB_015 J3_17385.4 | |
| J3_4V9A_039 | 1/AA/672:673, 1/AA/717:725, 1/AA/732:734 | No text annotation | homologous J3_4LFB_012 J3_11934.4 | |
| J3_4V9A_001 | 1/AA/826:829, 1/AA/857:861, 1/AA/868:874 | No text annotation | homologous J3_4LFB_001 J3_85054.4 | |
| J3_4V9A_002 | 1/AA/936:939, 1/AA/1344:1350, 1/AA/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_4V9A_003 | 1/AA/943:946, 1/AA/1235:1237, 1/AA/1337:1340 | No text annotation | homologous J3_4LFB_003 J3_52655.4 | |
| J3_4V9A_004 | 1/AA/955:962, 1/AA/973:984, 1/AA/1221:1225 | No text annotation | homologous J3_5J7L_006 J3_83516.4 | |
| J3_4V9A_005 | 1/AA/990:993, 1/AA/1045:1047, 1/AA/1210:1215 | No text annotation | homologous J3_5J7L_007 J3_82572.1 | |
| J3_4V9A_040 | 1/AA/990:997, 1/AA/1044:1047, 1/AA/1210:1215 | No text annotation | homologous J3_4LFB_016 J3_76475.2 | |
| J3_4V9A_071 | 1/AA/1003:1006, 1/AA/1023:1027, 1/AA/1034:1037 | No text annotation | ||
| J3_4V9A_007 | 1/AA/1063:1068, 1/AA/1107:1113, 1/AA/1187:1193 | No text annotation | homologous J3_4LFB_007 J3_08394.3 | |
| J3_4V9A_041 | 1/AA/1073:1074, 1/AA/1083:1086, 1/AA/1099:1102 | No text annotation | homologous J3_4LFB_017 J3_79369.1 | |
| J3_4V9A_008 | 1/AA/1116:1118, 1/AA/1155:1161, 1/AA/1175:1184 | No text annotation | homologous J3_4LFB_018 J3_17791.2 | |
| J3_4V9A_009 | 1/AA/1237:1241, 1/AA/1296:1303, 1/AA/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
| J3_4V9A_042 | 1/BA/30:31, 1/BA/474:481, 1/BA/509:510 | No text annotation | geometric J3_8VTW_036 NA | |
| J3_4V9A_043 | 1/BA/30:31, 1/BA/474:484, 1/BA/496:510 | No text annotation | homologous J3_9DFE_002 J3_92134.2 | |
| J3_4V9A_044 | 1/BA/32:35, 1/BA/445:461, 1/BA/468:473 | No text annotation | homologous J3_9DFE_003 J3_30040.2 | |
| J3_4V9A_045 | 1/BA/56:57, 1/BA/70:76, 1/BA/110:114 | No text annotation | homologous J3_9DFE_004 J3_35667.2 | |
| J3_4V9A_046 | 1/BA/269:270, 1/BA/270:271, 1/BA/366:370 | No text annotation | homologous J3_4WF9_022 J3_97971.2 | |
| J3_4V9A_047 | 1/BA/297:301, 1/BA/316:325, 1/BA/337:341 | No text annotation | homologous J3_9DFE_006 J3_46299.2 | |
| J3_4V9A_010 | 1/BA/683:689, 1/BA/773:775, 1/BA/791:794 | No text annotation | homologous J3_7RQB_004 NA | |
| J3_4V9A_011 | 1/BA/698:700, 1/BA/732:736, 1/BA/760:763 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_4V9A_012 | 1/BA/1055:1059, 1/BA/1079:1087, 1/BA/1102:1104 | No text annotation | ||
| J3_4V9A_013 | 1/BA/1298:1303, 1/BA/1625:1627, 1/BA/1639:1642 | No text annotation | homologous J3_7RQB_007 NA | |
| J3_4V9A_014 | 1/BA/1306:1309, 1/BA/1605:1611, 1/BA/1620:1622 | No text annotation | homologous J3_7RQB_008 NA | |
| J3_4V9A_048 | 1/BA/1344:1350, 1/BA/1381:1385, 1/BA/1402:1403 | No text annotation | homologous J3_9DFE_012 J3_31965.2 | |
| J3_4V9A_049 | 1/BA/1424:1429, 1/BA/1564:1565, 1/BA/1568:1574 | No text annotation | homologous J3_9DFE_013 J3_34864.2 | |
| J3_4V9A_015 | 1/BA/2091:2093, 1/BA/2196:2205, 1/BA/2219:2228 | No text annotation | homologous J3_7RQB_010 NA | |
| J3_4V9A_050 | 1/BA/2282:2284, 1/BA/2384:2395, 1/BA/2421:2427 | No text annotation | homologous J3_9DFE_015 J3_20992.1 | |
| J3_4V9A_016 | 1/BA/2295:2297, 1/BA/2321:2323, 1/BA/2332:2337 | No text annotation | homologous J3_7RQB_011 NA | |
| J3_4V9A_017 | 1/BA/2517:2520, 1/BA/2545:2547, 1/BA/2561:2567 | No text annotation | homologous J3_7RQB_012 NA | |
| J3_4V9A_018 | 1/BA/2789:2791, 1/BA/2805:2811, 1/BA/2889:2894 | No text annotation | homologous J3_7A0S_012 J3_20574.1 | |
| J3_4V9A_051 | 1/BA/2814:2815, 1/BA/2831:2836, 1/BA/2882:2886 | No text annotation | homologous J3_9DFE_019 J3_76911.2 | |
| J3_4V9A_072 | 1/BB/11:16, 1/BB/68:69, 1/BB/107:109 | No text annotation | homologous J3_9DFE_020 J3_12003.2 | |
| J3_4V9A_053 | 1/CA/46:47, 1/CA/361:367, 1/CA/393:395 | No text annotation | geometric J3_4LFB_010 J3_67856.4 | |
| J3_4V9A_054 | 1/CA/46:52, 1/CA/359:367, 1/CA/393:395 | No text annotation | homologous J3_4LFB_014 J3_46317.4 | |
| J3_4V9A_055 | 1/CA/586:588, 1/CA/651:654, 1/CA/754:755 | No text annotation | geometric J3_6CZR_016 NA | |
| J3_4V9A_056 | 1/CA/586:588, 1/CA/651:655, 1/CA/751:755 | No text annotation | homologous J3_4LFB_015 J3_17385.4 | |
| J3_4V9A_057 | 1/CA/672:673, 1/CA/717:725, 1/CA/732:734 | No text annotation | homologous J3_6CZR_017 NA | |
| J3_4V9A_019 | 1/CA/826:829, 1/CA/857:861, 1/CA/868:874 | No text annotation | homologous J3_6CZR_018 NA | |
| J3_4V9A_058 | 1/CA/936:939, 1/CA/1344:1350, 1/CA/1372:1379 | No text annotation | homologous J3_6CZR_061 NA | |
| J3_4V9A_020 | 1/CA/943:946, 1/CA/1235:1237, 1/CA/1337:1340 | No text annotation | homologous J3_4LFB_003 J3_52655.4 | |
| J3_4V9A_073 | 1/CA/955:962, 1/CA/973:984, 1/CA/1221:1225 | No text annotation | homologous J3_4LFB_004 J3_83516.4 | |
| J3_4V9A_022 | 1/CA/990:998A, 1/CA/1042:1047, 1/CA/1210:1215 | No text annotation | ||
| J3_4V9A_074 | 1/CA/1003:1006, 1/CA/1023:1028, 1/CA/1033:1037 | No text annotation | ||
| J3_4V9A_024 | 1/CA/1063:1068, 1/CA/1107:1113, 1/CA/1187:1193 | No text annotation | homologous J3_4LFB_007 J3_08394.3 | |
| J3_4V9A_060 | 1/CA/1073:1074, 1/CA/1083:1086, 1/CA/1099:1102 | No text annotation | homologous J3_4LFB_017 J3_79369.1 | |
| J3_4V9A_025 | 1/CA/1116:1118, 1/CA/1155:1161, 1/CA/1175:1184 | No text annotation | homologous J3_4LFB_018 J3_17791.2 | |
| J3_4V9A_026 | 1/CA/1237:1241, 1/CA/1296:1303, 1/CA/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
| J3_4V9A_061 | 1/DA/30:31, 1/DA/474:481, 1/DA/509:510 | No text annotation | geometric J3_8VTW_036 NA | |
| J3_4V9A_062 | 1/DA/30:31, 1/DA/474:484, 1/DA/496:510 | No text annotation | homologous J3_9DFE_002 J3_92134.2 | |
| J3_4V9A_063 | 1/DA/32:35, 1/DA/445:461, 1/DA/468:473 | No text annotation | homologous J3_4WF9_012 J3_30040.2 | |
| J3_4V9A_064 | 1/DA/56:57, 1/DA/70:76, 1/DA/110:114 | No text annotation | homologous J3_9DFE_004 J3_35667.2 | |
| J3_4V9A_065 | 1/DA/269:270, 1/DA/270:271, 1/DA/366:370 | No text annotation | homologous J3_9DFE_005 J3_97971.2 | |
| J3_4V9A_066 | 1/DA/297:301, 1/DA/316:325, 1/DA/337:341 | No text annotation | homologous J3_9DFE_006 J3_46299.2 | |
| J3_4V9A_027 | 1/DA/683:689, 1/DA/773:775, 1/DA/791:794 | No text annotation | homologous J3_7RQB_004 NA | |
| J3_4V9A_028 | 1/DA/698:700, 1/DA/732:736, 1/DA/760:763 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_4V9A_029 | 1/DA/1053:1059, 1/DA/1079:1091, 1/DA/1100:1106 | No text annotation | ||
| J3_4V9A_030 | 1/DA/1298:1303, 1/DA/1625:1627, 1/DA/1639:1642 | No text annotation | homologous J3_7RQB_007 NA | |
| J3_4V9A_031 | 1/DA/1306:1309, 1/DA/1605:1611, 1/DA/1620:1622 | No text annotation | homologous J3_7RQB_008 NA | |
| J3_4V9A_067 | 1/DA/1344:1350, 1/DA/1381:1385, 1/DA/1402:1403 | No text annotation | homologous J3_9DFE_012 J3_31965.2 | |
| J3_4V9A_032 | 1/DA/2091:2093, 1/DA/2196:2205, 1/DA/2219:2228 | No text annotation | homologous J3_7RQB_010 NA | |
| J3_4V9A_068 | 1/DA/2282:2284, 1/DA/2384:2395, 1/DA/2421:2427 | No text annotation | homologous J3_9DFE_015 J3_20992.1 | |
| J3_4V9A_033 | 1/DA/2295:2297, 1/DA/2321:2323, 1/DA/2332:2337 | No text annotation | homologous J3_7RQB_011 NA | |
| J3_4V9A_034 | 1/DA/2517:2520, 1/DA/2545:2547, 1/DA/2561:2567 | No text annotation | homologous J3_7RQB_012 NA | |
| J3_4V9A_035 | 1/DA/2789:2791, 1/DA/2805:2811, 1/DA/2889:2894 | No text annotation | homologous J3_7A0S_012 J3_20574.1 | |
| J3_4V9A_069 | 1/DA/2814:2815, 1/DA/2831:2836, 1/DA/2882:2886 | No text annotation | homologous J3_9DFE_019 J3_76911.2 | |
| J3_4V9A_070 | 1/DB/11:16, 1/DB/68:69, 1/DB/107:109 | No text annotation | homologous J3_9DFE_020 J3_12003.2 | |
| J4_4V9A_001 | 1/AA/115:122, 1/AA/239:240, 1/AA/286:289, 1/AA/311:312 | No text annotation | homologous J4_4LFB_001 J4_35578.3 | |
| J4_4V9A_002 | 1/AA/142:144, 1/AA/178:183, 1/AA/194:198, 1/AA/219:221 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_4V9A_003 | 1/AA/575:577, 1/AA/764:769, 1/AA/810:821, 1/AA/879:880 | No text annotation | homologous J4_4LFB_003 J4_61885.6 | |
| J4_4V9A_004 | 1/AC/7:10, 1/AC/25:27, 1/AC/43:49, 1/AC/65:66 | tRNA junction | homologous J4_5E81_027 J4_70449.29 | |
| J4_4V9A_005 | 1/BA/268:269, 1/BA/370:375, 1/BA/399:406, 1/BA/421:424 | No text annotation | homologous J4_9DFE_001 J4_45801.6 | |
| J4_4V9A_006 | 1/BA/297:301, 1/BA/316:319, 1/BA/323:325, 1/BA/337:341 | No text annotation | homologous J4_9DFE_002 J4_71729.5 | |
| J4_4V9A_007 | 1/BA/1270:1276, 1/BA/1294:1295, 1/BA/1645:1648, 1/BA/2009:2010 | No text annotation | homologous J4_9DFE_003 J4_64571.5 | |
| J4_4V9A_008 | 1/BA/1310:1314, 1/BA/1338:1343, 1/BA/1404:1405, 1/BA/1597:1604 | No text annotation | homologous J4_9DFE_004 J4_69051.6 | |
| J4_4V9A_009 | 1/BA/1313:1314, 1/BA/1338:1343, 1/BA/1404:1405, 1/BA/1597:1603 | No text annotation | homologous J4_9DFE_005 J4_10313.5 | |
| J4_4V9A_010 | 1/BA/1444:1445, 1/BA/1466:1467, 1/BA/1525:1526, 1/BA/1546:1547 | No text annotation | homologous J4_9DFE_006 J4_24280.2 | |
| J4_4V9A_011 | 1/BA/1772:1776, 1/BA/1788:1792, 1/BA/1827:1830, 1/BA/1975:1979 | No text annotation | homologous J4_5J7L_025 J4_61477.5 | |
| J4_4V9A_012 | 1/BA/1833:1835, 1/BA/1905:1906, 1/BA/1924:1933, 1/BA/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_4V9A_013 | 1/BA/2285:2289, 1/BA/2343:2347, 1/BA/2370:2372, 1/BA/2381:2383 | No text annotation | homologous J4_4WF9_008 J4_04930.6 | |
| J4_4V9A_014 | 1/BA/2643:2646, 1/BA/2674:2676, 1/BA/2731:2735, 1/BA/2769:2771 | No text annotation | homologous J4_9DFE_010 J4_77044.4 | |
| J4_4V9A_015 | 1/CA/115:122, 1/CA/239:240, 1/CA/286:289, 1/CA/311:312 | No text annotation | homologous J4_4LFB_001 J4_35578.3 | |
| J4_4V9A_016 | 1/CA/142:144, 1/CA/178:183, 1/CA/194:198, 1/CA/219:221 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_4V9A_017 | 1/CA/575:577, 1/CA/764:769, 1/CA/810:821, 1/CA/879:880 | No text annotation | homologous J4_4LFB_003 J4_61885.6 | |
| J4_4V9A_018 | 1/CC/7:10, 1/CC/25:27, 1/CC/43:49, 1/CC/65:66 | tRNA junction | homologous J4_6UFM_001 J4_70449.29 | |
| J4_4V9A_019 | 1/DA/268:269, 1/DA/370:375, 1/DA/399:406, 1/DA/421:424 | No text annotation | homologous J4_9DFE_001 J4_45801.6 | |
| J4_4V9A_020 | 1/DA/297:301, 1/DA/316:319, 1/DA/323:325, 1/DA/337:341 | No text annotation | homologous J4_9DFE_002 J4_71729.5 | |
| J4_4V9A_021 | 1/DA/1270:1276, 1/DA/1294:1295, 1/DA/1645:1648, 1/DA/2009:2010 | No text annotation | homologous J4_9DFE_003 J4_64571.5 | |
| J4_4V9A_022 | 1/DA/1310:1314, 1/DA/1338:1343, 1/DA/1404:1405, 1/DA/1597:1604 | No text annotation | homologous J4_9DFE_004 J4_69051.6 | |
| J4_4V9A_023 | 1/DA/1313:1314, 1/DA/1338:1343, 1/DA/1404:1405, 1/DA/1597:1603 | No text annotation | homologous J4_9DFE_005 J4_10313.5 | |
| J4_4V9A_024 | 1/DA/1444:1445, 1/DA/1466:1467, 1/DA/1525:1526, 1/DA/1546:1547 | No text annotation | homologous J4_9DFE_006 J4_24280.2 | |
| J4_4V9A_025 | 1/DA/1772:1776, 1/DA/1788:1792, 1/DA/1827:1830, 1/DA/1975:1979 | No text annotation | homologous J4_5J7L_025 J4_61477.5 | |
| J4_4V9A_026 | 1/DA/1833:1835, 1/DA/1905:1906, 1/DA/1924:1933, 1/DA/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_4V9A_027 | 1/DA/2285:2289, 1/DA/2343:2347, 1/DA/2370:2372, 1/DA/2381:2383 | No text annotation | homologous J4_4WF9_008 J4_04930.6 | |
| J4_4V9A_028 | 1/DA/2643:2646, 1/DA/2674:2676, 1/DA/2731:2735, 1/DA/2769:2771 | No text annotation | homologous J4_9DFE_010 J4_77044.4 | |
| J5_4V9A_001 | 1/AA/36:39, 1/AA/403:406, 1/AA/436:442, 1/AA/492:500, 1/AA/545:548 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
| J5_4V9A_002 | 1/AA/58:61, 1/AA/106:113, 1/AA/314:316, 1/AA/337:339, 1/AA/350:354 | No text annotation | homologous J5_4LFB_002 J5_59910.6 | |
| J5_4V9A_003 | 1/BA/47:54, 1/BA/116:121, 1/BA/130:131, 1/BA/148:150, 1/BA/176:178 | No text annotation | homologous J5_9DFE_001 J5_01737.2 | |
| J5_4V9A_004 | 1/BA/268:270, 1/BA/270:271, 1/BA/366:375, 1/BA/399:406, 1/BA/421:424 | No text annotation | ||
| J5_4V9A_005 | 1/BA/531:533, 1/BA/560:564, 1/BA/577:579, 1/BA/1261:1262, 1/BA/2017:2018 | No text annotation | homologous J5_9DFE_003 J5_43153.5 | |
| J5_4V9A_006 | 1/BA/584:589, 1/BA/668:671, 1/BA/809:812, 1/BA/1195:1196, 1/BA/1250:1256 | No text annotation | homologous J5_9DFE_004 J5_74302.5 | |
| J5_4V9A_007 | 1/BA/601:604, 1/BA/624:628, 1/BA/635:638, 1/BA/650:654, 1/BA/654:656 | No text annotation | ||
| J5_4V9A_008 | 1/BA/1674:1682, 1/BA/1706:1707, 1/BA/1751:1752, 1/BA/1756:1764, 1/BA/1988:1990 | No text annotation | homologous J5_9DFE_005 J5_62523.6 | |
| J5_4V9A_021 | 1/BA/2057:2064, 1/BA/2446:2453, 1/BA/2500:2506, 1/BA/2583:2588, 1/BA/2606:2611 | No text annotation | ||
| J5_4V9A_010 | 1/BA/2074:2077, 1/BA/2243:2246, 1/BA/2258:2259, 1/BA/2281:2282, 1/BA/2427:2435 | No text annotation | homologous J5_9DFE_007 J5_39529.1 | |
| J5_4V9A_011 | 1/CA/36:39, 1/CA/403:406, 1/CA/436:442, 1/CA/492:500, 1/CA/545:548 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
| J5_4V9A_012 | 1/CA/58:61, 1/CA/106:113, 1/CA/314:316, 1/CA/337:339, 1/CA/350:354 | No text annotation | homologous J5_5J7L_003 J5_59910.6 | |
| J5_4V9A_013 | 1/DA/47:54, 1/DA/116:121, 1/DA/130:131, 1/DA/148:150, 1/DA/176:178 | No text annotation | homologous J5_9DFE_001 J5_01737.2 | |
| J5_4V9A_014 | 1/DA/268:270, 1/DA/270:271, 1/DA/366:375, 1/DA/399:406, 1/DA/421:424 | No text annotation | ||
| J5_4V9A_015 | 1/DA/531:533, 1/DA/560:564, 1/DA/577:579, 1/DA/1261:1262, 1/DA/2017:2018 | No text annotation | homologous J5_9DFE_003 J5_43153.5 | |
| J5_4V9A_016 | 1/DA/584:589, 1/DA/668:671, 1/DA/809:812, 1/DA/1195:1196, 1/DA/1250:1256 | No text annotation | homologous J5_9DFE_004 J5_74302.5 | |
| J5_4V9A_017 | 1/DA/601:604, 1/DA/624:628, 1/DA/635:638, 1/DA/650:654, 1/DA/654:656 | No text annotation | ||
| J5_4V9A_018 | 1/DA/1674:1682, 1/DA/1706:1707, 1/DA/1751:1752, 1/DA/1756:1764, 1/DA/1988:1990 | No text annotation | homologous J5_9DFE_005 J5_62523.6 | |
| J5_4V9A_019 | 1/DA/2057:2064, 1/DA/2446:2453, 1/DA/2500:2507, 1/DA/2582:2588, 1/DA/2606:2611 | No text annotation | ||
| J5_4V9A_020 | 1/DA/2074:2077, 1/DA/2243:2246, 1/DA/2258:2259, 1/DA/2281:2282, 1/DA/2427:2435 | No text annotation | homologous J5_9DFE_007 J5_39529.1 | |
| J6_4V9A_001 | 1/BA/45:46, 1/BA/179:183, 1/BA/214:224, 1/BA/231:235, 1/BA/262:266, 1/BA/426:433 | No text annotation | ||
| J6_4V9A_002 | 1/BA/2074:2077, 1/BA/2243:2246, 1/BA/2258:2259, 1/BA/2281:2284, 1/BA/2384:2395, 1/BA/2421:2435 | No text annotation | ||
| J6_4V9A_003 | 1/DA/45:46, 1/DA/179:183, 1/DA/214:224, 1/DA/231:235, 1/DA/262:266, 1/DA/426:433 | No text annotation | ||
| J6_4V9A_004 | 1/DA/2074:2077, 1/DA/2243:2246, 1/DA/2258:2259, 1/DA/2281:2284, 1/DA/2384:2395, 1/DA/2421:2435 | No text annotation | ||
| J7_4V9A_001 | 1/BA/8:15, 1/BA/525:531, 1/BA/2018:2023, 1/BA/2040:2043, 1/BA/2625:2630, 1/BA/2788:2789, 1/BA/2894:2895 | No text annotation | ||
| J7_4V9A_002 | 1/BA/817:822, 1/BA/835:836, 1/BA/943:946, 1/BA/971:976, 1/BA/987:991, 1/BA/1163:1164, 1/BA/1185:1190 | No text annotation | ||
| J7_4V9A_003 | 1/DA/817:822, 1/DA/835:836, 1/DA/943:946, 1/DA/971:976, 1/DA/987:991, 1/DA/1163:1164, 1/DA/1185:1190 | No text annotation | ||
| J8_4V9A_002 | 1/DA/8:15, 1/DA/525:531, 1/DA/2018:2023, 1/DA/2040:2043, 1/DA/2625:2630, 1/DA/2788:2791, 1/DA/2805:2811, 1/DA/2889:2895 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V9A_006 | No text annotation | ||
| J3_4V9A_052 | No text annotation | ||
| J3_4V9A_021 | No text annotation | ||
| J3_4V9A_059 | No text annotation | ||
| J3_4V9A_023 | No text annotation | ||
| J5_4V9A_009 | No text annotation | ||
| J8_4V9A_001 | No text annotation |
Coloring options: