HL_4V9A_136

3D structure

PDB id

4V9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tetracycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGGCAACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9A_136 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3599

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4V9A|1|CA|C|1264
4V9A|1|CA|G|1265
4V9A|1|CA|G|1266
4V9A|1|CA|C|1267
4V9A|1|CA|A|1268
4V9A|1|CA|A|1269
4V9A|1|CA|C|1270
4V9A|1|CA|G|1271

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CP

30S RIBOSOMAL PROTEIN S13

Chain CV

30S RIBOSOMAL PROTEIN S19

Chain CX

30S RIBOSOMAL PROTEIN THX