HL_4V9A_152

3D structure

PDB id

4V9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tetracycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCUUGUC

Length

7 nucleotides

Bulged bases

4V9A|1|DA|U|270|||M, 4V9A|1|DA|U|270|||O

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9A_152 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2021

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

4V9A|1|DA|G|270|||J
4V9A|1|DA|C|270|||K
4V9A|1|DA|U|270|||L
4V9A|1|DA|U|270|||M
4V9A|1|DA|G|270|||N
4V9A|1|DA|U|270|||O
4V9A|1|DA|C|270|||P

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain DK

50S ribosomal protein L9

Chain DZ

50S ribosomal protein L28