HL_4V9A_164

3D structure

PDB id

4V9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tetracycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAACAG

Length

7 nucleotides

Bulged bases

4V9A|1|DA|C|645

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9A_164 not in the Motif Atlas

Homologous match to HL_7RQB_021

Geometric discrepancy: 0.2663

The information below is about HL_7RQB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

4V9A|1|DA|C|641
4V9A|1|DA|G|642
4V9A|1|DA|A|643
4V9A|1|DA|A|644
4V9A|1|DA|C|645
4V9A|1|DA|A|646
4V9A|1|DA|G|647

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D6

50S ribosomal protein L33

Chain D8

50S ribosomal protein L35