HL_4V9A_174

3D structure

PDB id

4V9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tetracycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

4V9A|1|DA|A|1095

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9A_174 not in the Motif Atlas

Geometric match to HL_5J7L_151

Geometric discrepancy: 0.3179

The information below is about HL_5J7L_151

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

3

Unit IDs

4V9A|1|DA|C|1092
4V9A|1|DA|G|1093
4V9A|1|DA|U|1094
4V9A|1|DA|A|1095
4V9A|1|DA|A|1096
4V9A|1|DA|U|1097
4V9A|1|DA|A|1098
4V9A|1|DA|G|1099

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DH

50S ribosomal protein L6