HL_4V9A_181

3D structure

PDB id

4V9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tetracycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAUGGACG

Length

8 nucleotides

Bulged bases

4V9A|1|DA|U|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9A_181 not in the Motif Atlas

Geometric match to HL_7RQB_037

Geometric discrepancy: 0.1407

The information below is about HL_7RQB_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32426.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

4V9A|1|DA|C|1451
4V9A|1|DA|A|1453
4V9A|1|DA|U|1454
4V9A|1|DA|G|1455
4V9A|1|DA|G|1456
4V9A|1|DA|A|1457
4V9A|1|DA|C|1458
4V9A|1|DA|G|1459

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D0

50S ribosomal protein L17