HL_4V9B_057

3D structure

PDB id

4V9B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tigecycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGUUGAG

Length

7 nucleotides

Bulged bases

4V9B|1|BA|U|614, 4V9B|1|BA|G|615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9B_057 not in the Motif Atlas

Homologous match to HL_7A0S_019

Geometric discrepancy: 0.2826

The information below is about HL_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13184.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

4V9B|1|BA|C|611
4V9B|1|BA|G|612
4V9B|1|BA|U|613
4V9B|1|BA|U|614
4V9B|1|BA|G|615
4V9B|1|BA|A|616
4V9B|1|BA|G|617

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BF

50S ribosomal protein L4