HL_4V9B_125

3D structure

PDB id

4V9B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tigecycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9B_125 not in the Motif Atlas

Homologous match to HL_5J7L_014

Geometric discrepancy: 0.1295

The information below is about HL_5J7L_014

Detailed Annotation

GNRA-like with tWH

Broad Annotation

GNRA

Motif group

HL_10453.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4V9B|1|CA|G|617
4V9B|1|CA|C|618
4V9B|1|CA|U|619
4V9B|1|CA|C|620
4V9B|1|CA|A|621
4V9B|1|CA|A|622
4V9B|1|CA|C|623

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CG

30S RIBOSOMAL PROTEIN S4

Chain CS

30S RIBOSOMAL PROTEIN S16