HL_4V9B_132
3D structure
- PDB id
- 4V9B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of the 70S ribosome with tigecycline.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAAGCAACGCG
- Length
- 12 nucleotides
- Bulged bases
- 4V9B|1|CA|G|971
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V9B_132 not in the Motif Atlas
- Geometric match to HL_2Y9H_005
- Geometric discrepancy: 0.3241
- The information below is about HL_2Y9H_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_51020.1
- Basepair signature
- cWW-cSW-F
- Number of instances in this motif group
- 11
Unit IDs
4V9B|1|CA|C|962
4V9B|1|CA|G|963
4V9B|1|CA|A|964
4V9B|1|CA|A|965
4V9B|1|CA|G|966
4V9B|1|CA|C|967
4V9B|1|CA|A|968
4V9B|1|CA|A|969
4V9B|1|CA|C|970
4V9B|1|CA|G|971
4V9B|1|CA|C|972
4V9B|1|CA|G|973
Current chains
- Chain CA
- 16S ribosomal RNA
Nearby chains
- Chain CC
- Transfer RNA; tRNA
- Chain CL
- 30S RIBOSOMAL PROTEIN S9
- Chain CM
- 30S RIBOSOMAL PROTEIN S10
- Chain CQ
- 30S RIBOSOMAL PROTEIN S14
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