HL_4V9B_147

3D structure

PDB id

4V9B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tigecycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCAGCCCGGUAGC

Length

13 nucleotides

Bulged bases

4V9B|1|CD|G|18, 4V9B|1|CD|G|19, 4V9B|1|CD|U|20, 4V9B|1|CD|A|21

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9B_147 not in the Motif Atlas

Homologous match to HL_6UFM_001

Geometric discrepancy: 0.5882

The information below is about HL_6UFM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_04642.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4V9B|1|CD|G|12
4V9B|1|CD|C|13
4V9B|1|CD|A|14
4V9B|1|CD|G|15
4V9B|1|CD|C|16
4V9B|1|CD|C|17
4V9B|1|CD|C|17|||A
4V9B|1|CD|G|18
4V9B|1|CD|G|19
4V9B|1|CD|U|20
4V9B|1|CD|A|21
4V9B|1|CD|G|22
4V9B|1|CD|C|23

Current chains

Chain CD

TRNA-FMET

Nearby chains

Chain DA

Large subunit ribosomal RNA; LSU rRNA