HL_4V9B_227

3D structure

PDB id

4V9B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tigecycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUUUUUG

Length

7 nucleotides

Bulged bases

4V9B|1|BA|U|163

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9B_227 not in the Motif Atlas

Geometric match to HL_8S95_003

Geometric discrepancy: 0.3894

The information below is about HL_8S95_003

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

4V9B|1|BA|C|155
4V9B|1|BA|U|161
4V9B|1|BA|U|162
4V9B|1|BA|U|163
4V9B|1|BA|U|164
4V9B|1|BA|U|165
4V9B|1|BA|G|171

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BZ

50S ribosomal protein L28