HL_4V9C_018

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCCUUGAGG

Length

9 nucleotides

Bulged bases

4V9C|1|AA|U|842, 4V9C|1|AA|A|845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9C_018 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3338

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V9C|1|AA|C|839
4V9C|1|AA|C|840
4V9C|1|AA|C|841
4V9C|1|AA|U|842
4V9C|1|AA|U|843
4V9C|1|AA|G|844
4V9C|1|AA|A|845
4V9C|1|AA|G|846
4V9C|1|AA|G|847

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AR

30S ribosomal protein S18