4V9C Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4V9C_001 | 1/AA/12:22 | No text annotation | homologous HL_5J7L_001 NA | |
| HL_4V9C_232 | 1/AA/82:87 | No text annotation | ||
| HL_4V9C_233 | 1/AA/158:163 | GNRA | homologous HL_4LFB_003 HL_34789.2 | |
| HL_4V9C_004 | 1/AA/185:192 | GNRA with extra cWW | geometric HL_7A0S_056 HL_87268.1 | |
| HL_4V9C_234 | 1/AA/202:215 | No text annotation | ||
| HL_4V9C_005 | 1/AA/207:212 | No text annotation | geometric HL_8C3A_196 NA | |
| HL_4V9C_006 | 1/AA/259:267 | GNRA related | homologous HL_5J7L_006 NA | |
| HL_4V9C_007 | 1/AA/296:301 | GNRA | homologous HL_4LFB_007 HL_34789.2 | |
| HL_4V9C_008 | 1/AA/320:333 | No text annotation | homologous HL_5J7L_008 NA | |
| HL_4V9C_009 | 1/AA/342:347 | UNCG | geometric HL_6QN3_003 HL_61337.2 | |
| HL_4V9C_010 | 1/AA/379:384 | GNRA | homologous HL_5J7L_010 NA | |
| HL_4V9C_011 | 1/AA/419:424 | UNCG | homologous HL_5J7L_011 NA | |
| HL_4V9C_235 | 1/AA/459:473 | No text annotation | ||
| HL_4V9C_012 | 1/AA/460:472 | No text annotation | ||
| HL_4V9C_013 | 1/AA/522:527 | No text annotation | geometric HL_4WF9_003 HL_75660.7 | |
| HL_4V9C_014 | 1/AA/617:623 | GNRA-like with tWH | homologous HL_5J7L_014 NA | |
| HL_4V9C_015 | 1/AA/689:698 | No text annotation | homologous HL_5J7L_015 NA | |
| HL_4V9C_016 | 1/AA/726:731 | GNRA | homologous HL_5J7L_016 NA | |
| HL_4V9C_017 | 1/AA/786:796 | No text annotation | homologous HL_5J7L_017 NA | |
| HL_4V9C_236 | 1/AA/840:846 | No text annotation | ||
| HL_4V9C_019 | 1/AA/862:867 | GNRA | homologous HL_4LFB_019 HL_34789.2 | |
| HL_4V9C_020 | 1/AA/897:902 | GNRA | homologous HL_5J7L_020 NA | |
| HL_4V9C_021 | 1/AA/963:972 | No text annotation | homologous HL_4LFB_021 HL_97521.1 | |
| HL_4V9C_022 | 1/AA/1011:1018 | No text annotation | homologous HL_6CZR_093 NA | |
| HL_4V9C_023 | 1/AA/1076:1081 | GNRA | homologous HL_4LFB_024 HL_34789.2 | |
| HL_4V9C_024 | 1/AA/1089:1096 | T-loop related | homologous HL_5J7L_024 NA | |
| HL_4V9C_214 | 1/AA/1122:1151 | No text annotation | ||
| HL_4V9C_025 | 1/AA/1134:1140 | No text annotation | homologous HL_5J7L_025 NA | |
| HL_4V9C_026 | 1/AA/1165:1171 | GNRA | homologous HL_5J7L_026 NA | |
| HL_4V9C_215 | 1/AA/1263:1272 | No text annotation | geometric HL_8KAL_008 NA | |
| HL_4V9C_027 | 1/AA/1265:1270 | GNRA | homologous HL_4LFB_028 HL_34789.2 | |
| HL_4V9C_028 | 1/AA/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_93658.1 | |
| HL_4V9C_029 | 1/AA/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_86432.1 | |
| HL_4V9C_030 | 1/AA/1449:1454 | UNCG | homologous HL_4LFB_031 HL_61337.2 | |
| HL_4V9C_031 | 1/AA/1515:1520 | GNRA | homologous HL_6CZR_103 NA | |
| HL_4V9C_032 | 1/AV/13:22 | No text annotation | homologous HL_6PMO_003 NA | |
| HL_4V9C_033 | 1/AV/31:39 | tRNA anticodon loop | homologous HL_4V90_033 NA | |
| HL_4V9C_034 | 1/AV/53:61 | T-loop with 2 stacked bulged bases | homologous HL_5WWT_002 HL_33597.2 | |
| HL_4V9C_035 | 1/BA/59:68 | No text annotation | homologous HL_5J7L_134 NA | |
| HL_4V9C_036 | 1/BA/87:95 | No text annotation | homologous HL_5J7L_135 NA | |
| HL_4V9C_037 | 1/BA/123:128 | No text annotation | homologous HL_5J7L_136 NA | |
| HL_4V9C_237 | 1/BA/136:143 | No text annotation | ||
| HL_4V9C_039 | 1/BA/158:168 | No text annotation | homologous HL_5J7L_138 NA | |
| HL_4V9C_040 | 1/BA/188:208 | No text annotation | ||
| HL_4V9C_041 | 1/BA/225:230 | No text annotation | homologous HL_5J7L_140 NA | |
| HL_4V9C_042 | 1/BA/246:252 | No text annotation | homologous HL_7RQB_008 NA | |
| HL_4V9C_043 | 1/BA/305:312 | T-loop with 2 stacked bulged bases | homologous HL_4WF9_010 HL_13999.2 | |
| HL_4V9C_044 | 1/BA/319:323 | No text annotation | homologous HL_5J7L_143 NA | |
| HL_4V9C_045 | 1/BA/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 NA | |
| HL_4V9C_046 | 1/BA/382:392 | No text annotation | homologous HL_5J7L_145 NA | |
| HL_4V9C_047 | 1/BA/410:417 | Pseudoknot geometry | homologous HL_5J7L_146 NA | |
| HL_4V9C_048 | 1/BA/462:467 | GNRA | homologous HL_4WF9_015 HL_34789.2 | |
| HL_4V9C_049 | 1/BA/487:493 | GNRA | homologous HL_5J7L_148 NA | |
| HL_4V9C_050 | 1/BA/543:550 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_4V9C_051 | 1/BA/566:575 | T-loop with 2 stacked bulged bases | geometric HL_5J7L_150 NA | |
| HL_4V9C_216 | 1/BA/606:622 | No text annotation | ||
| HL_4V9C_052 | 1/BA/611:617 | No text annotation | geometric HL_5J7L_151 NA | |
| HL_4V9C_053 | 1/BA/629:634 | GNRA | homologous HL_5J7L_152 NA | |
| HL_4V9C_054 | 1/BA/641:647 | No text annotation | homologous HL_5J7L_153 NA | |
| HL_4V9C_055 | 1/BA/712:719 | GNRA wlth tandem sheared | homologous HL_5J7L_154 NA | |
| HL_4V9C_056 | 1/BA/744:753 | No text annotation | homologous HL_4WF9_023 HL_50204.1 | |
| HL_4V9C_057 | 1/BA/779:785 | UNCG variation | homologous HL_7A0S_023 HL_51020.2 | |
| HL_4V9C_058 | 1/BA/826:831 | No text annotation | homologous HL_4WF9_025 HL_27530.1 | |
| HL_4V9C_060 | 1/BA/955:962 | GNRA | homologous HL_4WF9_027 HL_34789.2 | |
| HL_4V9C_061 | 1/BA/978:985 | No text annotation | homologous HL_7A0S_027 HL_47171.1 | |
| HL_4V9C_062 | 1/BA/1063:1076 | No text annotation | ||
| HL_4V9C_063 | 1/BA/1092:1099 | GNRA wlth tandem sheared | homologous HL_6PRV_002 HL_98423.2 | |
| HL_4V9C_064 | 1/BA/1172:1177 | No text annotation | ||
| HL_4V9C_065 | 1/BA/1222:1227 | GNRA | homologous HL_5J7L_164 NA | |
| HL_4V9C_066 | 1/BA/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_165 NA | |
| HL_4V9C_067 | 1/BA/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_166 NA | |
| HL_4V9C_068 | 1/BA/1363:1368 | GNRA | homologous HL_5J7L_167 NA | |
| HL_4V9C_069 | 1/BA/1389:1398 | No text annotation | homologous HL_5J7L_168 NA | |
| HL_4V9C_070 | 1/BA/1451:1459 | Mini UNCG | geometric HL_1ZBH_001 HL_12626.2 | |
| HL_4V9C_071 | 1/BA/1492:1498 | Pseudoknot geometry with 3' bulge | geometric HL_5J7L_170 NA | |
| HL_4V9C_238 | 1/BA/1532:1539 | No text annotation | ||
| HL_4V9C_073 | 1/BA/1565:1568 | Mini UNCG | homologous HL_5J7L_172 NA | |
| HL_4V9C_074 | 1/BA/1612:1619 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_4V9C_075 | 1/BA/1630:1636 | GNRA | homologous HL_5J7L_174 NA | |
| HL_4V9C_076 | 1/BA/1691:1696 | No text annotation | homologous HL_7RQB_042 NA | |
| HL_4V9C_077 | 1/BA/1720:1740 | No text annotation | ||
| HL_4V9C_078 | 1/BA/1752:1756 | No text annotation | homologous HL_5J7L_177 NA | |
| HL_4V9C_079 | 1/BA/1777:1787 | No text annotation | homologous HL_5J7L_178 NA | |
| HL_4V9C_080 | 1/BA/1806:1811 | GNRA related | homologous HL_5J7L_179 NA | |
| HL_4V9C_219 | 1/BA/1864:1878 | No text annotation | ||
| HL_4V9C_081 | 1/BA/1868:1873 | GNRA variation | geometric HL_5J7L_180 NA | |
| HL_4V9C_082 | 1/BA/1910:1920 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_4V9C_083 | 1/BA/1949:1957 | No text annotation | homologous HL_7RQB_049 NA | |
| HL_4V9C_084 | 1/BA/2027:2036 | No text annotation | homologous HL_4WF9_047 HL_78372.1 | |
| HL_4V9C_239 | 1/BA/2139:2152 | No text annotation | ||
| HL_4V9C_085 | 1/BA/2140:2151 | No text annotation | ||
| HL_4V9C_086 | 1/BA/2209:2215 | No text annotation | homologous HL_5J7L_185 NA | |
| HL_4V9C_087 | 1/BA/2248:2256 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_4V9C_088 | 1/BA/2264:2276 | No text annotation | homologous HL_5J7L_187 NA | |
| HL_4V9C_221 | 1/BA/2303:2313 | No text annotation | homologous HL_9DFE_053 NA | |
| HL_4V9C_090 | 1/BA/2324:2331 | Pseudoknot geometry | homologous HL_5J7L_189 NA | |
| HL_4V9C_091 | 1/BA/2356:2361 | GNRA | homologous HL_5J7L_190 NA | |
| HL_4V9C_092 | 1/BA/2374:2379 | GNRA | homologous HL_5J7L_191 NA | |
| HL_4V9C_093 | 1/BA/2404:2413 | No text annotation | homologous HL_5J7L_192 NA | |
| HL_4V9C_094 | 1/BA/2471:2479 | No text annotation | homologous HL_5J7L_193 NA | |
| HL_4V9C_222 | 1/BA/2528:2535 | GNRA variation | homologous HL_5J7L_194 NA | |
| HL_4V9C_096 | 1/BA/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_48677.1 | |
| HL_4V9C_097 | 1/BA/2594:2599 | GNRA | homologous HL_5J7L_196 NA | |
| HL_4V9C_098 | 1/BA/2658:2663 | GNRA | geometric HL_5XTM_002 HL_34789.2 | |
| HL_4V9C_099 | 1/BA/2701:2706 | Ribsomal LSU H95 | homologous HL_5J7L_198 NA | |
| HL_4V9C_100 | 1/BA/2745:2759 | No text annotation | homologous HL_5J7L_199 NA | |
| HL_4V9C_101 | 1/BA/2796:2799 | Mini UNCG | geometric HL_5TBW_071 NA | |
| HL_4V9C_102 | 1/BA/2819:2827 | No text annotation | homologous HL_5J7L_201 NA | |
| HL_4V9C_103 | 1/BA/2856:2861 | GNRA | homologous HL_5J7L_202 NA | |
| HL_4V9C_223 | 1/BB/38:44 | No text annotation | homologous HL_5J7L_203 NA | |
| HL_4V9C_105 | 1/BB/86:90 | Mini UNCG | homologous HL_5J7L_204 NA | |
| HL_4V9C_106 | 1/CA/12:22 | No text annotation | homologous HL_5J7L_001 NA | |
| HL_4V9C_224 | 1/CA/82:87 | No text annotation | ||
| HL_4V9C_108 | 1/CA/158:163 | GNRA | homologous HL_4LFB_003 HL_34789.2 | |
| HL_4V9C_225 | 1/CA/185:192 | No text annotation | geometric HL_4WF9_003 HL_75660.7 | |
| HL_4V9C_109 | 1/CA/186:191 | GNRA | homologous HL_5J7L_004 NA | |
| HL_4V9C_226 | 1/CA/203:214 | No text annotation | ||
| HL_4V9C_110 | 1/CA/206:213 | No text annotation | ||
| HL_4V9C_111 | 1/CA/259:267 | GNRA related | homologous HL_5J7L_006 NA | |
| HL_4V9C_112 | 1/CA/296:301 | GNRA | homologous HL_5J7L_007 NA | |
| HL_4V9C_113 | 1/CA/320:333 | No text annotation | homologous HL_4LFB_008 HL_39665.1 | |
| HL_4V9C_114 | 1/CA/342:347 | UNCG | homologous HL_5J7L_009 NA | |
| HL_4V9C_115 | 1/CA/379:384 | GNRA | homologous HL_5J7L_010 NA | |
| HL_4V9C_116 | 1/CA/419:424 | UNCG | homologous HL_5J7L_011 NA | |
| HL_4V9C_117 | 1/CA/462:470 | GNRA wlth extra near cWW | homologous HL_5J7L_012 NA | |
| HL_4V9C_118 | 1/CA/522:527 | No text annotation | geometric HL_5J7L_143 NA | |
| HL_4V9C_119 | 1/CA/617:623 | GNRA-like with tWH | homologous HL_5J7L_014 NA | |
| HL_4V9C_120 | 1/CA/689:698 | No text annotation | homologous HL_4LFB_015 HL_38491.2 | |
| HL_4V9C_121 | 1/CA/726:731 | GNRA | homologous HL_5J7L_016 NA | |
| HL_4V9C_240 | 1/CA/786:796 | No text annotation | homologous HL_5J7L_017 NA | |
| HL_4V9C_123 | 1/CA/840:846 | No text annotation | ||
| HL_4V9C_124 | 1/CA/862:867 | GNRA | homologous HL_4LFB_019 HL_34789.2 | |
| HL_4V9C_125 | 1/CA/897:902 | GNRA | homologous HL_4LFB_020 HL_34789.2 | |
| HL_4V9C_126 | 1/CA/963:972 | No text annotation | homologous HL_4LFB_021 HL_97521.1 | |
| HL_4V9C_227 | 1/CA/1009:1020 | No text annotation | homologous HL_5J7L_216 NA | |
| HL_4V9C_127 | 1/CA/1012:1017 | GNRA | geometric HL_4V88_210 NA | |
| HL_4V9C_128 | 1/CA/1076:1081 | GNRA | homologous HL_4LFB_024 HL_34789.2 | |
| HL_4V9C_129 | 1/CA/1089:1096 | T-loop related | homologous HL_5J7L_024 NA | |
| HL_4V9C_130 | 1/CA/1133:1141 | No text annotation | ||
| HL_4V9C_131 | 1/CA/1165:1171 | GNRA | homologous HL_5J7L_026 NA | |
| HL_4V9C_132 | 1/CA/1265:1270 | GNRA | homologous HL_5J7L_027 NA | |
| HL_4V9C_133 | 1/CA/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_93658.1 | |
| HL_4V9C_134 | 1/CA/1356:1366 | No text annotation | homologous HL_5J7L_029 NA | |
| HL_4V9C_135 | 1/CA/1449:1454 | UNCG | homologous HL_4LFB_031 HL_61337.2 | |
| HL_4V9C_136 | 1/CA/1515:1520 | GNRA | homologous HL_4LFB_032 HL_34789.2 | |
| HL_4V9C_137 | 1/CV/13:22 | tRNA D-loop | homologous HL_6JXM_001 HL_20490.1 | |
| HL_4V9C_138 | 1/CV/31:39 | tRNA anticodon loop | homologous HL_4V90_033 NA | |
| HL_4V9C_139 | 1/CV/49:65 | No text annotation | homologous HL_5E81_221 NA | |
| HL_4V9C_140 | 1/DA/59:68 | No text annotation | homologous HL_5J7L_134 NA | |
| HL_4V9C_141 | 1/DA/87:95 | No text annotation | homologous HL_5J7L_135 NA | |
| HL_4V9C_142 | 1/DA/123:128 | No text annotation | homologous HL_5J7L_136 NA | |
| HL_4V9C_228 | 1/DA/136:143 | No text annotation | ||
| HL_4V9C_229 | 1/DA/158:168 | No text annotation | homologous HL_5J7L_138 NA | |
| HL_4V9C_145 | 1/DA/194:201 | No text annotation | homologous HL_5J7L_139 NA | |
| HL_4V9C_146 | 1/DA/225:230 | No text annotation | homologous HL_5J7L_140 NA | |
| HL_4V9C_147 | 1/DA/246:252 | No text annotation | homologous HL_5J7L_141 NA | |
| HL_4V9C_148 | 1/DA/305:312 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_142 NA | |
| HL_4V9C_149 | 1/DA/319:323 | No text annotation | homologous HL_5J7L_143 NA | |
| HL_4V9C_150 | 1/DA/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 NA | |
| HL_4V9C_151 | 1/DA/382:392 | No text annotation | homologous HL_5J7L_145 NA | |
| HL_4V9C_152 | 1/DA/410:417 | Pseudoknot geometry | homologous HL_5J7L_146 NA | |
| HL_4V9C_153 | 1/DA/462:467 | GNRA | homologous HL_4WF9_015 HL_34789.2 | |
| HL_4V9C_154 | 1/DA/487:493 | GNRA | homologous HL_5J7L_148 NA | |
| HL_4V9C_155 | 1/DA/543:550 | No text annotation | homologous HL_5J7L_149 NA | |
| HL_4V9C_156 | 1/DA/566:575 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_150 NA | |
| HL_4V9C_157 | 1/DA/611:617 | No text annotation | homologous HL_5J7L_151 NA | |
| HL_4V9C_158 | 1/DA/629:634 | GNRA | homologous HL_5J7L_152 NA | |
| HL_4V9C_159 | 1/DA/641:647 | No text annotation | homologous HL_5J7L_153 NA | |
| HL_4V9C_160 | 1/DA/712:719 | GNRA wlth tandem sheared | homologous HL_5J7L_154 NA | |
| HL_4V9C_161 | 1/DA/744:753 | No text annotation | homologous HL_4WF9_023 HL_50204.1 | |
| HL_4V9C_162 | 1/DA/779:785 | UNCG variation | homologous HL_7A0S_023 HL_51020.2 | |
| HL_4V9C_163 | 1/DA/826:831 | No text annotation | homologous HL_5J7L_157 NA | |
| HL_4V9C_165 | 1/DA/955:962 | GNRA | homologous HL_4WF9_027 HL_34789.2 | |
| HL_4V9C_166 | 1/DA/978:985 | No text annotation | homologous HL_7A0S_027 HL_47171.1 | |
| HL_4V9C_167 | 1/DA/1090:1101 | No text annotation | ||
| HL_4V9C_168 | 1/DA/1172:1177 | No text annotation | ||
| HL_4V9C_169 | 1/DA/1222:1227 | GNRA | homologous HL_5J7L_164 NA | |
| HL_4V9C_170 | 1/DA/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_165 NA | |
| HL_4V9C_171 | 1/DA/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_166 NA | |
| HL_4V9C_172 | 1/DA/1363:1368 | GNRA | homologous HL_5J7L_167 NA | |
| HL_4V9C_173 | 1/DA/1389:1398 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_4V9C_174 | 1/DA/1451:1459 | Mini UNCG with extended bulge | homologous HL_5J7L_169 NA | |
| HL_4V9C_175 | 1/DA/1492:1498 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 NA | |
| HL_4V9C_241 | 1/DA/1533:1538 | UNCG | homologous HL_5J7L_171 NA | |
| HL_4V9C_177 | 1/DA/1565:1568 | Mini UNCG | homologous HL_5J7L_172 NA | |
| HL_4V9C_178 | 1/DA/1612:1619 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_4V9C_179 | 1/DA/1630:1636 | GNRA | homologous HL_5J7L_174 NA | |
| HL_4V9C_180 | 1/DA/1691:1696 | UNCG | geometric HL_5J7L_175 NA | |
| HL_4V9C_181 | 1/DA/1720:1740 | No text annotation | ||
| HL_4V9C_182 | 1/DA/1752:1756 | No text annotation | homologous HL_5J7L_177 NA | |
| HL_4V9C_183 | 1/DA/1777:1787 | No text annotation | homologous HL_4WF9_043 HL_87681.1 | |
| HL_4V9C_184 | 1/DA/1806:1811 | GNRA related | homologous HL_5J7L_179 NA | |
| HL_4V9C_185 | 1/DA/1868:1873 | GNRA variation | homologous HL_5J7L_180 NA | |
| HL_4V9C_186 | 1/DA/1910:1920 | No text annotation | homologous HL_9DFE_046 HL_82185.1 | |
| HL_4V9C_187 | 1/DA/1949:1957 | No text annotation | homologous HL_7RQB_049 NA | |
| HL_4V9C_188 | 1/DA/2027:2036 | No text annotation | homologous HL_4WF9_047 HL_78372.1 | |
| HL_4V9C_190 | 1/DA/2209:2215 | No text annotation | homologous HL_5J7L_185 NA | |
| HL_4V9C_191 | 1/DA/2248:2256 | No text annotation | homologous HL_5J7L_186 NA | |
| HL_4V9C_192 | 1/DA/2264:2276 | No text annotation | homologous HL_5J7L_187 NA | |
| HL_4V9C_193 | 1/DA/2303:2313 | No text annotation | homologous HL_7RQB_055 NA | |
| HL_4V9C_194 | 1/DA/2324:2331 | Pseudoknot geometry | homologous HL_5J7L_189 NA | |
| HL_4V9C_195 | 1/DA/2356:2361 | GNRA | homologous HL_5J7L_190 NA | |
| HL_4V9C_196 | 1/DA/2374:2379 | GNRA | homologous HL_5J7L_191 NA | |
| HL_4V9C_197 | 1/DA/2404:2413 | No text annotation | homologous HL_5J7L_192 NA | |
| HL_4V9C_198 | 1/DA/2471:2479 | No text annotation | homologous HL_5J7L_193 NA | |
| HL_4V9C_199 | 1/DA/2528:2535 | GNRA variation | homologous HL_5J7L_194 NA | |
| HL_4V9C_200 | 1/DA/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_48677.1 | |
| HL_4V9C_201 | 1/DA/2594:2599 | GNRA | homologous HL_5J7L_196 NA | |
| HL_4V9C_202 | 1/DA/2658:2663 | GNRA | homologous HL_7RQB_064 NA | |
| HL_4V9C_203 | 1/DA/2701:2706 | Ribsomal LSU H95 | homologous HL_5J7L_198 NA | |
| HL_4V9C_204 | 1/DA/2745:2759 | No text annotation | homologous HL_5J7L_199 NA | |
| HL_4V9C_205 | 1/DA/2795:2801 | UNCG variation | geometric HL_6VMY_004 HL_51020.2 | |
| HL_4V9C_206 | 1/DA/2819:2827 | No text annotation | homologous HL_5J7L_201 NA | |
| HL_4V9C_207 | 1/DA/2856:2861 | GNRA | homologous HL_5J7L_202 NA | |
| HL_4V9C_231 | 1/DB/34:48 | No text annotation | homologous HL_5J7L_215 NA | |
| HL_4V9C_208 | 1/DB/38:44 | No text annotation | geometric HL_5J7L_203 NA | |
| HL_4V9C_209 | 1/DB/86:90 | Mini UNCG | homologous HL_5J7L_204 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V9C_002 | No text annotation | ||
| HL_4V9C_003 | No text annotation | ||
| HL_4V9C_210 | No text annotation | ||
| HL_4V9C_211 | No text annotation | ||
| HL_4V9C_212 | tRNA D-loop | ||
| HL_4V9C_018 | No text annotation | ||
| HL_4V9C_213 | No text annotation | ||
| HL_4V9C_038 | No text annotation | ||
| HL_4V9C_059 | No text annotation | ||
| HL_4V9C_217 | No text annotation | ||
| HL_4V9C_218 | No text annotation | ||
| HL_4V9C_072 | No text annotation | ||
| HL_4V9C_220 | No text annotation | ||
| HL_4V9C_089 | No text annotation | ||
| HL_4V9C_095 | No text annotation | ||
| HL_4V9C_104 | No text annotation | ||
| HL_4V9C_107 | No text annotation | ||
| HL_4V9C_122 | No text annotation | ||
| HL_4V9C_143 | No text annotation | ||
| HL_4V9C_144 | No text annotation | ||
| HL_4V9C_164 | No text annotation | ||
| HL_4V9C_176 | No text annotation | ||
| HL_4V9C_230 | No text annotation | ||
| HL_4V9C_189 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4V9C_492 | 1/AA/30:32, 1/AA/552:553 | Single bulged G | homologous IL_5J7L_001 NA | |
| IL_4V9C_002 | 1/AA/44:45, 1/AA/396:398 | Single bulged A | homologous IL_5J7L_002 NA | |
| IL_4V9C_003 | 1/AA/47:52, 1/AA/359:361 | No text annotation | homologous IL_5J7L_003 NA | |
| IL_4V9C_004 | 1/AA/54:56, 1/AA/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_34520.2 | |
| IL_4V9C_005 | 1/AA/63:66, 1/AA/103:104 | Multiple bulged bases | homologous IL_5J7L_005 NA | |
| IL_4V9C_006 | 1/AA/67:69, 1/AA/99:102 | Minor groove platform with extra cWW | homologous IL_5J7L_006 NA | |
| IL_4V9C_007 | 1/AA/70:73, 1/AA/97:98 | Minor groove platform | homologous IL_5J7L_007 NA | |
| IL_4V9C_009 | 1/AA/75:76, 1/AA/93:95 | Major groove intercalation | geometric IL_4WF9_106 IL_77710.1 | |
| IL_4V9C_011 | 1/AA/128:131, 1/AA/231:233 | Isolated non-canonical cWW pair | homologous IL_5J7L_009 NA | |
| IL_4V9C_012 | 1/AA/132:136, 1/AA/227:230 | Minor groove platform related | homologous IL_5J7L_010 NA | |
| IL_4V9C_013 | 1/AA/144:146, 1/AA/176:178 | Isolated cWH basepair | homologous IL_5J7L_011 NA | |
| IL_4V9C_522 | 1/AA/147:153, 1/AA/168:175 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 NA | |
| IL_4V9C_017 | 1/AA/200:206, 1/AA/213:217 | No text annotation | ||
| IL_4V9C_018 | 1/AA/242:247, 1/AA/277:284 | Kink-turn with non-sequential stacking | homologous IL_5J7L_014 NA | |
| IL_4V9C_019 | 1/AA/249:252, 1/AA/274:275 | No text annotation | homologous IL_5J7L_015 NA | |
| IL_4V9C_493 | 1/AA/292:293, 1/AA/304:308 | C-loop | homologous IL_5J7L_016 NA | |
| IL_4V9C_023 | 1/AA/371:375, 1/AA/389:390 | C-loop | homologous IL_4LFB_015 IL_26900.1 | |
| IL_4V9C_024 | 1/AA/375:376, 1/AA/387:389 | Single bulged G | geometric IL_4LFB_016 IL_28408.2 | |
| IL_4V9C_437 | 1/AA/409:416, 1/AA/427:433 | No text annotation | homologous IL_5J7L_020 NA | |
| IL_4V9C_027 | 1/AA/440:442, 1/AA/492:497 | No text annotation | homologous IL_5J7L_021 NA | |
| IL_4V9C_494 | 1/AA/446:450, 1/AA/483:488 | tSH-tHW-tWW | homologous IL_5J7L_022 NA | |
| IL_4V9C_029 | 1/AA/450:454, 1/AA/479:483 | No text annotation | ||
| IL_4V9C_030 | 1/AA/454:455, 1/AA/477:479 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_4V9C_439 | 1/AA/454:457, 1/AA/475:479 | No text annotation | ||
| IL_4V9C_033 | 1/AA/504:511, 1/AA/540:541 | SSU/LSU pseudoknot | homologous IL_5J7L_024 NA | |
| IL_4V9C_035 | 1/AA/515:521, 1/AA/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_4V9C_036 | 1/AA/569:575, 1/AA/880:881 | No text annotation | homologous IL_4LFB_022 IL_20847.1 | |
| IL_4V9C_037 | 1/AA/580:584, 1/AA/757:761 | tSH-tHW-tHS | homologous IL_5J7L_027 NA | |
| IL_4V9C_040 | 1/AA/594:596, 1/AA/644:645 | Major groove platform | geometric IL_5J7L_028 NA | |
| IL_4V9C_041 | 1/AA/597:599, 1/AA/639:643 | 8-nt loop receptor | geometric IL_6CK5_002 IL_70784.1 | |
| IL_4V9C_042 | 1/AA/605:612, 1/AA/628:633 | No text annotation | homologous IL_5J7L_030 NA | |
| IL_4V9C_044 | 1/AA/654:655, 1/AA/751:754 | Major groove platform; stack outside cWW | homologous IL_5J7L_031 NA | |
| IL_4V9C_045 | 1/AA/658:659, 1/AA/746:748 | Single stack bend | homologous IL_5J7L_032 NA | |
| IL_4V9C_046 | 1/AA/662:666, 1/AA/740:743 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 NA | |
| IL_4V9C_495 | 1/AA/673:677, 1/AA/713:717 | Triple non-canonical cWW pairs | geometric IL_5J7L_361 NA | |
| IL_4V9C_047 | 1/AA/684:688, 1/AA/699:706 | Kink-turn | homologous IL_5J7L_035 NA | |
| IL_4V9C_496 | 1/AA/774:778, 1/AA/804:805 | Left turn | homologous IL_5J7L_036 NA | |
| IL_4V9C_049 | 1/AA/779:783, 1/AA/799:803 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_05821.1 | |
| IL_4V9C_052 | 1/AA/887:895, 1/AA/904:910 | 9x7 Sarcin-Ricin with inserted C; G-bulge | homologous IL_6CZR_146 NA | |
| IL_4V9C_053 | 1/AA/922:923, 1/AA/1393:1395 | Single bulged A | homologous IL_4LFB_035 IL_14190.2 | |
| IL_4V9C_054 | 1/AA/925:927, 1/AA/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_28408.2 | |
| IL_4V9C_055 | 1/AA/933:935, 1/AA/1380:1384 | Minor groove platform | homologous IL_5J7L_041 NA | |
| IL_4V9C_058 | 1/AA/953:954, 1/AA/1226:1228 | Minor groove platform | homologous IL_5J7L_042 NA | |
| IL_4V9C_060 | 1/AA/993:997, 1/AA/1044:1045 | Minor groove platform | geometric IL_5J7L_043 NA | |
| IL_4V9C_497 | 1/AA/998:999, 1/AA/1041:1043 | Single stack bend | homologous IL_5J7L_044 NA | |
| IL_4V9C_498 | 1/AA/1001:1010, 1/AA/1019:1039 | No text annotation | ||
| IL_4V9C_063 | 1/AA/1003:1010, 1/AA/1019:1037 | No text annotation | ||
| IL_4V9C_064 | 1/AA/1048:1050, 1/AA/1208:1209 | Single bulged U | homologous IL_5J7L_046 NA | |
| IL_4V9C_499 | 1/AA/1052:1056, 1/AA/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_82453.1 | |
| IL_4V9C_066 | 1/AA/1057:1058, 1/AA/1199:1203 | Minor groove platform | homologous IL_5J7L_048 NA | |
| IL_4V9C_067 | 1/AA/1060:1061, 1/AA/1195:1197 | Single bulged A | homologous IL_5J7L_049 NA | |
| IL_4V9C_444 | 1/AA/1060:1063, 1/AA/1193:1197 | Tandem non-canonical cWW pairs | geometric IL_1D4R_001 IL_15225.2 | |
| IL_4V9C_068 | 1/AA/1061:1063, 1/AA/1193:1195 | Isolated non-canonical cWW pair | geometric IL_5J7L_050 NA | |
| IL_4V9C_500 | 1/AA/1158:1161, 1/AA/1175:1181 | No text annotation | geometric IL_4LFB_050 IL_32376.1 | |
| IL_4V9C_072 | 1/AA/1247:1253, 1/AA/1284:1290 | No text annotation | homologous IL_5J7L_054 NA | |
| IL_4V9C_073 | 1/AA/1255:1258, 1/AA/1277:1282 | 180 degree turn | homologous IL_5J7L_055 NA | |
| IL_4V9C_074 | 1/AA/1259:1263, 1/AA/1272:1276 | Double sheared with non-canonical cWW | homologous IL_5J7L_056 NA | |
| IL_4V9C_076 | 1/AA/1303:1308, 1/AA/1329:1334 | No text annotation | geometric IL_5J7L_057 NA | |
| IL_4V9C_079 | 1/AA/1399:1401, 1/AA/1501:1504 | No text annotation | geometric IL_4V88_463 NA | |
| IL_4V9C_080 | 1/AA/1401:1404, 1/AA/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_4V9C_081 | 1/AA/1405:1407, 1/AA/1494:1496 | Isolated non-canonical cWW pair | geometric IL_1ZZ5_002 IL_01003.2 | |
| IL_4V9C_082 | 1/AA/1407:1409, 1/AA/1491:1494 | Decoding loop related | geometric IL_3C3Z_002 IL_53541.1 | |
| IL_4V9C_445 | 1/AA/1407:1411, 1/AA/1489:1494 | No text annotation | ||
| IL_4V9C_084 | 1/AA/1412:1414, 1/AA/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 NA | |
| IL_4V9C_085 | 1/AA/1416:1419, 1/AA/1481:1484 | Double sheared | homologous IL_5J7L_062 NA | |
| IL_4V9C_087 | 1/AA/1430:1435, 1/AA/1466:1470 | Triple sheared related | homologous IL_5J7L_063 NA | |
| IL_4V9C_501 | 1/AA/1436:1442, 1/AA/1460:1465 | No text annotation | ||
| IL_4V9C_089 | 1/AA/1440:1443, 1/AA/1459:1461 | Minor groove platform with extra cWW | geometric IL_4V88_411 NA | |
| IL_4V9C_090 | 1/AA/1445:1448, 1/AA/1455:1457 | No text annotation | homologous IL_5J7L_065 NA | |
| IL_4V9C_092 | 1/BA/24:30, 1/BA/510:516 | Triple sheared with non-canonical cWW | homologous IL_5J7L_245 NA | |
| IL_4V9C_093 | 1/BA/36:37, 1/BA/442:444 | Single bulged A | homologous IL_5J7L_246 NA | |
| IL_4V9C_094 | 1/BA/43:44, 1/BA/434:436 | Minor groove platform | homologous IL_5J7L_247 NA | |
| IL_4V9C_097 | 1/BA/81:85, 1/BA/97:105 | Kink-turn | homologous IL_7A0S_004 IL_94910.1 | |
| IL_4V9C_099 | 1/BA/183:184, 1/BA/212:214 | Single stack bend | homologous IL_5J7L_249 NA | |
| IL_4V9C_100 | 1/BA/239:245, 1/BA/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 NA | |
| IL_4V9C_101 | 1/BA/269:271, 1/BA/366:370 | No text annotation | homologous IL_5J7L_252 NA | |
| IL_4V9C_103 | 1/BA/274:281, 1/BA/359:363 | No text annotation | geometric IL_5J7L_253 NA | |
| IL_4V9C_104 | 1/BA/293:295, 1/BA/343:347 | No text annotation | homologous IL_5J7L_254 NA | |
| IL_4V9C_105 | 1/BA/536:539, 1/BA/554:557 | Double sheared | homologous IL_5J7L_256 NA | |
| IL_4V9C_107 | 1/BA/564:566, 1/BA/575:577 | Isolated non-canonical cWW pair | homologous IL_5J7L_257 NA | |
| IL_4V9C_108 | 1/BA/606:611, 1/BA/617:622 | No text annotation | ||
| IL_4V9C_109 | 1/BA/672:674, 1/BA/806:808 | Isolated non-canonical cWW pair | geometric IL_5J7L_259 NA | |
| IL_4V9C_110 | 1/BA/674:678, 1/BA/799:806 | tHW-tHW cross-strand stack | homologous IL_7RQB_018 NA | |
| IL_4V9C_111 | 1/BA/697:698, 1/BA/763:765 | Single bulged A | geometric IL_7RQB_019 NA | |
| IL_4V9C_112 | 1/BA/702:703, 1/BA/728:730 | Single bulged G | geometric IL_5J7L_262 NA | |
| IL_4V9C_113 | 1/BA/703:707, 1/BA/724:728 | Triple sheared | homologous IL_5J7L_263 NA | |
| IL_4V9C_115 | 1/BA/738:740, 1/BA/757:758 | Major groove platform | homologous IL_5J7L_264 NA | |
| IL_4V9C_116 | 1/BA/775:777, 1/BA/787:791 | Multiple bulged bases | geometric IL_7RQB_023 NA | |
| IL_4V9C_117 | 1/BA/837:838, 1/BA/940:942 | Single stack bend | homologous IL_4WF9_028 IL_15011.2 | |
| IL_4V9C_118 | 1/BA/844:847, 1/BA/933:934 | 90 degree turn | geometric IL_5J7L_267 NA | |
| IL_4V9C_448 | 1/BA/844:848, 1/BA/930:934 | No text annotation | homologous IL_5J7L_399 NA | |
| IL_4V9C_119 | 1/BA/847:848, 1/BA/930:933 | Stack outside cWW | homologous IL_5J7L_268 NA | |
| IL_4V9C_120 | 1/BA/850:851, 1/BA/926:928 | Single stack bend | homologous IL_5J7L_269 NA | |
| IL_4V9C_122 | 1/BA/856:862, 1/BA/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_5J7L_270 NA | |
| IL_4V9C_123 | 1/BA/862:863, 1/BA/913:915 | Single bulged G | geometric IL_5J7L_271 NA | |
| IL_4V9C_502 | 1/BA/864:868, 1/BA/909:912 | C-loop with bulged stacked A's | homologous IL_5J7L_272 NA | |
| IL_4V9C_125 | 1/BA/870:872, 1/BA/905:907 | Isolated non-canonical cWW pair | homologous IL_5J7L_273 NA | |
| IL_4V9C_126 | 1/BA/875:879, 1/BA/898:902 | Double sheared with non-canonical cWW | geometric IL_5J7L_274 NA | |
| IL_4V9C_127 | 1/BA/879:883, 1/BA/893:898 | Double sheared with non-canonical cWW | homologous IL_5J7L_274 NA | |
| IL_4V9C_128 | 1/BA/994:996, 1/BA/1159:1160 | Single bulged C | homologous IL_5J7L_276 NA | |
| IL_4V9C_129 | 1/BA/998:1002, 1/BA/1153:1157 | UAA/GAN | homologous IL_4WF9_036 IL_08938.1 | |
| IL_4V9C_130 | 1/BA/1004:1011, 1/BA/1150:1151 | SSU/LSU pseudoknot | geometric IL_5J7L_278 NA | |
| IL_4V9C_131 | 1/BA/1011:1013, 1/BA/1149:1150 | Single bulged U | homologous IL_5J7L_279 NA | |
| IL_4V9C_133 | 1/BA/1018:1024, 1/BA/1140:1144 | Kink-turn related | homologous IL_5J7L_280 NA | |
| IL_4V9C_134 | 1/BA/1024:1030, 1/BA/1124:1140 | No text annotation | geometric IL_5J7L_281 NA | |
| IL_4V9C_135 | 1/BA/1031:1034, 1/BA/1121:1123 | Isolated non-canonical cWW pair | homologous IL_4WF9_041 IL_76400.1 | |
| IL_4V9C_136 | 1/BA/1038:1041, 1/BA/1114:1117 | Tandem non-canonical cWW pairs | homologous IL_5J7L_283 NA | |
| IL_4V9C_137 | 1/BA/1043:1051, 1/BA/1108:1112 | Kink-turn | geometric IL_8VTW_041 NA | |
| IL_4V9C_450 | 1/BA/1043:1053, 1/BA/1106:1112 | No text annotation | ||
| IL_4V9C_451 | 1/BA/1058:1063, 1/BA/1076:1080 | No text annotation | ||
| IL_4V9C_141 | 1/BA/1196:1198, 1/BA/1247:1250 | Isolated cWS basepair | homologous IL_5J7L_286 NA | |
| IL_4V9C_452 | 1/BA/1202:1206, 1/BA/1240:1243 | No text annotation | homologous IL_5J7L_287 NA | |
| IL_4V9C_143 | 1/BA/1208:1215, 1/BA/1234:1238 | Kink-turn | homologous IL_5J7L_288 NA | |
| IL_4V9C_145 | 1/BA/1262:1270, 1/BA/2010:2017 | 9x8 Sarcin-Ricin; G-bulge | geometric IL_4WF9_008 IL_93502.1 | |
| IL_4V9C_146 | 1/BA/1310:1313, 1/BA/1603:1604 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_4V9C_147 | 1/BA/1319:1323, 1/BA/1331:1333 | C-loop | homologous IL_5J7L_291 NA | |
| IL_4V9C_503 | 1/BA/1350:1355, 1/BA/1376:1381 | No text annotation | ||
| IL_4V9C_148 | 1/BA/1351:1356, 1/BA/1375:1380 | No text annotation | ||
| IL_4V9C_149 | 1/BA/1357:1361, 1/BA/1370:1374 | tSH-tHW-tHS | homologous IL_5J7L_293 NA | |
| IL_4V9C_454 | 1/BA/1357:1362, 1/BA/1369:1374 | tSH-tHW-tHS-cWW | geometric IL_3LQX_002 IL_35186.2 | |
| IL_4V9C_153 | 1/BA/1415:1417, 1/BA/1581:1587 | No text annotation | ||
| IL_4V9C_154 | 1/BA/1417:1421, 1/BA/1577:1581 | UAA/GAN | geometric IL_5J7L_295 NA | |
| IL_4V9C_157 | 1/BA/1432:1435, 1/BA/1557:1561 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 NA | |
| IL_4V9C_158 | 1/BA/1437:1440, 1/BA/1551:1555 | tSH-tHW | homologous IL_5J7L_297 NA | |
| IL_4V9C_159 | 1/BA/1450:1451, 1/BA/1459:1461 | Single bulged U | geometric IL_3SNP_004 IL_97561.2 | |
| IL_4V9C_160 | 1/BA/1468:1471, 1/BA/1520:1524 | No text annotation | homologous IL_5J7L_299 NA | |
| IL_4V9C_162 | 1/BA/1474:1478, 1/BA/1513:1517 | tSH-tHW-tHS | homologous IL_5J7L_300 NA | |
| IL_4V9C_457 | 1/BA/1474:1481, 1/BA/1510:1517 | No text annotation | ||
| IL_4V9C_164 | 1/BA/1481:1483, 1/BA/1506:1510 | No text annotation | ||
| IL_4V9C_458 | 1/BA/1481:1485, 1/BA/1504:1510 | No text annotation | ||
| IL_4V9C_504 | 1/BA/1488:1491, 1/BA/1499:1501 | Isolated non-canonical cWW pair | geometric IL_1U6B_001 IL_42997.5 | |
| IL_4V9C_167 | 1/BA/1526:1529, 1/BA/1542:1546 | UAA/GAN variation | homologous IL_5J7L_303 NA | |
| IL_4V9C_461 | 1/BA/1651:1656, 1/BA/2004:2006 | No text annotation | homologous IL_5J7L_304 NA | |
| IL_4V9C_170 | 1/BA/1663:1665, 1/BA/1995:1997 | Isolated tWW turn | homologous IL_5J7L_305 NA | |
| IL_4V9C_171 | 1/BA/1666:1669, 1/BA/1993:1994 | Major groove platform; stack outside cWW | homologous IL_5J7L_306 NA | |
| IL_4V9C_462 | 1/BA/1666:1674, 1/BA/1990:1994 | No text annotation | homologous IL_5J7L_386 NA | |
| IL_4V9C_172 | 1/BA/1669:1674, 1/BA/1990:1993 | Intercalated tWH | geometric IL_5J7L_307 NA | |
| IL_4V9C_174 | 1/BA/1686:1691, 1/BA/1696:1702 | tSH-tSH-tHH-tHS | geometric IL_7RQB_068 NA | |
| IL_4V9C_175 | 1/BA/1712:1718, 1/BA/1742:1746 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_5J7L_309 NA | |
| IL_4V9C_176 | 1/BA/1770:1771, 1/BA/1980:1982 | Single bulged A | homologous IL_5J7L_312 NA | |
| IL_4V9C_177 | 1/BA/1798:1804, 1/BA/1813:1821 | Kink-turn related | homologous IL_5J7L_313 NA | |
| IL_4V9C_178 | 1/BA/1837:1840, 1/BA/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 NA | |
| IL_4V9C_179 | 1/BA/1841:1842, 1/BA/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 NA | |
| IL_4V9C_180 | 1/BA/1846:1849, 1/BA/1893:1894 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_316 NA | |
| IL_4V9C_464 | 1/BA/1851:1860, 1/BA/1882:1891 | No text annotation | homologous IL_5J7L_387 NA | |
| IL_4V9C_181 | 1/BA/1864:1868, 1/BA/1873:1878 | Triple sheared related | geometric IL_5J7L_063 NA | |
| IL_4V9C_182 | 1/BA/1933:1934, 1/BA/1964:1967 | Bulged stacked bases | homologous IL_7RQB_076 NA | |
| IL_4V9C_183 | 1/BA/1934:1945, 1/BA/1961:1964 | No text annotation | geometric IL_4V9F_071 IL_04332.3 | |
| IL_4V9C_184 | 1/BA/2050:2052, 1/BA/2617:2618 | Major groove platform | homologous IL_5J7L_320 NA | |
| IL_4V9C_185 | 1/BA/2054:2056, 1/BA/2612:2615 | No text annotation | homologous IL_5J7L_321 NA | |
| IL_4V9C_186 | 1/BA/2067:2069, 1/BA/2442:2443 | Single bulged U | homologous IL_7A0S_075 IL_97561.2 | |
| IL_4V9C_187 | 1/BA/2070:2071, 1/BA/2438:2441 | Minor groove platform | homologous IL_5J7L_324 NA | |
| IL_4V9C_188 | 1/BA/2081:2083, 1/BA/2236:2239 | Isolated tHS basepair with bulges | homologous IL_5J7L_325 NA | |
| IL_4V9C_189 | 1/BA/2085:2087, 1/BA/2232:2234 | Isolated non-canonical cWW pair | homologous IL_5J7L_326 NA | |
| IL_4V9C_191 | 1/BA/2103:2110, 1/BA/2179:2186 | No text annotation | ||
| IL_4V9C_192 | 1/BA/2110:2120, 1/BA/2178:2179 | No text annotation | homologous IL_3U4M_002 IL_32056.1 | |
| IL_4V9C_505 | 1/BA/2123:2128, 1/BA/2160:2175 | Kink-turn | homologous IL_5J7L_390 NA | |
| IL_4V9C_194 | 1/BA/2129:2136, 1/BA/2155:2159 | Kink-turn | homologous IL_3U4M_004 IL_90775.2 | |
| IL_4V9C_196 | 1/BA/2202:2204, 1/BA/2220:2221 | Single bulged U | homologous IL_5J7L_331 NA | |
| IL_4V9C_198 | 1/BA/2350:2353, 1/BA/2364:2367 | Double sheared | homologous IL_5J7L_333 NA | |
| IL_4V9C_199 | 1/BA/2401:2403, 1/BA/2414:2415 | No text annotation | ||
| IL_4V9C_200 | 1/BA/2453:2454, 1/BA/2498:2500 | Single stack bend | geometric IL_4WF9_089 IL_15011.2 | |
| IL_4V9C_201 | 1/BA/2454:2455, 1/BA/2496:2498 | Major groove platform | homologous IL_4WF9_090 IL_48076.8 | |
| IL_4V9C_202 | 1/BA/2457:2459, 1/BA/2493:2494 | Major groove platform | geometric IL_4WF9_091 IL_48076.8 | |
| IL_4V9C_506 | 1/BA/2459:2461, 1/BA/2489:2493 | Major groove minor groove platform with extra cWW | homologous IL_5J7L_337 NA | |
| IL_4V9C_204 | 1/BA/2466:2470, 1/BA/2480:2484 | Double sheared with non-canonical cWW | homologous IL_5J7L_338 NA | |
| IL_4V9C_205 | 1/BA/2507:2508, 1/BA/2580:2582 | Major groove platform | homologous IL_4WF9_094 IL_46637.2 | |
| IL_4V9C_206 | 1/BA/2510:2512, 1/BA/2574:2578 | Isolated non-canonical cWW with bulges | geometric IL_5J7L_340 NA | |
| IL_4V9C_207 | 1/BA/2512:2513, 1/BA/2571:2574 | No text annotation | homologous IL_5J7L_341 NA | |
| IL_4V9C_208 | 1/BA/2522:2523, 1/BA/2540:2543 | Major groove platform with intercalation | homologous IL_7A0S_091 IL_94991.2 | |
| IL_4V9C_209 | 1/BA/2591:2592, 1/BA/2601:2603 | Single bulged A | homologous IL_5J7L_344 NA | |
| IL_4V9C_210 | 1/BA/2636:2640, 1/BA/2774:2782 | tSH-tHS-tHW | homologous IL_5J7L_345 NA | |
| IL_4V9C_213 | 1/BA/2652:2658, 1/BA/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_5J7L_346 NA | |
| IL_4V9C_214 | 1/BA/2680:2684, 1/BA/2725:2727 | C-loop | homologous IL_5J7L_347 NA | |
| IL_4V9C_215 | 1/BA/2687:2691, 1/BA/2718:2722 | UAA/GAN related, with intercalation | homologous IL_5J7L_348 NA | |
| IL_4V9C_216 | 1/BA/2695:2696, 1/BA/2711:2714 | Multiple bulged bases | homologous IL_5J7L_349 NA | |
| IL_4V9C_217 | 1/BA/2737:2742, 1/BA/2762:2767 | UAA/GAN with extra cWW | homologous IL_5J7L_350 NA | |
| IL_4V9C_218 | 1/BA/2794:2796, 1/BA/2799:2802 | Not an internal loop | geometric IL_5VCI_005 NA | |
| IL_4V9C_219 | 1/BA/2806:2811, 1/BA/2889:2892 | No text annotation | homologous IL_5J7L_351 NA | |
| IL_4V9C_220 | 1/BA/2838:2839, 1/BA/2878:2880 | Major groove intercalation | homologous IL_5J7L_352 NA | |
| IL_4V9C_221 | 1/BA/2843:2846, 1/BA/2870:2874 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 NA | |
| IL_4V9C_222 | 1/BA/2847:2852, 1/BA/2865:2869 | tHS double platform | homologous IL_5J7L_354 NA | |
| IL_4V9C_224 | 1/BB/17:18, 1/BB/65:67 | Major groove intercalation | homologous IL_5J7L_355 NA | |
| IL_4V9C_466 | 1/BB/23:28, 1/BB/56:60 | No text annotation | homologous IL_9DFE_111 IL_18472.5 | |
| IL_4V9C_507 | 1/BB/30:31, 1/BB/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_4WF9_126 IL_73108.2 | |
| IL_4V9C_467 | 1/BB/34:38, 1/BB/44:48 | Symmetric double minor groove platform | homologous IL_5J7L_358 NA | |
| IL_4V9C_468 | 1/BB/71:79, 1/BB/97:105 | Bacterial 5S Loop E | homologous IL_5J7L_359 NA | |
| IL_4V9C_229 | 1/CA/30:32, 1/CA/552:553 | Single bulged G | homologous IL_5J7L_001 NA | |
| IL_4V9C_230 | 1/CA/44:45, 1/CA/396:398 | Single bulged A | homologous IL_5J7L_002 NA | |
| IL_4V9C_231 | 1/CA/47:52, 1/CA/359:361 | No text annotation | homologous IL_5J7L_003 NA | |
| IL_4V9C_232 | 1/CA/54:56, 1/CA/356:357 | Minor groove platform | homologous IL_5J7L_004 NA | |
| IL_4V9C_233 | 1/CA/63:66, 1/CA/103:104 | Multiple bulged bases | homologous IL_5J7L_005 NA | |
| IL_4V9C_234 | 1/CA/67:69, 1/CA/99:102 | Minor groove platform with extra cWW | homologous IL_5J7L_006 NA | |
| IL_4V9C_235 | 1/CA/70:73, 1/CA/97:98 | Minor groove platform | homologous IL_5J7L_007 NA | |
| IL_4V9C_469 | 1/CA/75:82, 1/CA/87:95 | No text annotation | ||
| IL_4V9C_237 | 1/CA/128:131, 1/CA/231:233 | Isolated non-canonical cWW pair | homologous IL_5J7L_009 NA | |
| IL_4V9C_238 | 1/CA/132:136, 1/CA/227:230 | Minor groove platform related | homologous IL_5J7L_010 NA | |
| IL_4V9C_508 | 1/CA/147:153, 1/CA/168:175 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 NA | |
| IL_4V9C_242 | 1/CA/202:206, 1/CA/213:215 | No text annotation | ||
| IL_4V9C_243 | 1/CA/242:247, 1/CA/277:284 | Kink-turn with non-sequential stacking | homologous IL_5J7L_014 NA | |
| IL_4V9C_244 | 1/CA/249:252, 1/CA/274:275 | No text annotation | homologous IL_4LFB_012 IL_22002.1 | |
| IL_4V9C_245 | 1/CA/292:293, 1/CA/304:308 | C-loop | homologous IL_5J7L_016 NA | |
| IL_4V9C_246 | 1/CA/367:369, 1/CA/392:393 | Single bulged U | homologous IL_6CZR_126 NA | |
| IL_4V9C_471 | 1/CA/371:375, 1/CA/389:390 | C-loop | homologous IL_5J7L_018 NA | |
| IL_4V9C_248 | 1/CA/375:376, 1/CA/387:389 | Single bulged G | geometric IL_4LFB_016 IL_28408.2 | |
| IL_4V9C_472 | 1/CA/375:379, 1/CA/384:389 | Partly complementary | geometric IL_7VYX_008 IL_71154.2 | |
| IL_4V9C_250 | 1/CA/409:416, 1/CA/427:433 | No text annotation | homologous IL_4LFB_017 IL_62329.1 | |
| IL_4V9C_509 | 1/CA/446:450, 1/CA/483:488 | tSH-tHW-tWW | homologous IL_5J7L_022 NA | |
| IL_4V9C_252 | 1/CA/450:454, 1/CA/479:483 | No text annotation | ||
| IL_4V9C_473 | 1/CA/450:455, 1/CA/477:483 | No text annotation | homologous IL_5J7L_023 NA | |
| IL_4V9C_253 | 1/CA/454:455, 1/CA/477:479 | Single stack bend | geometric IL_4LFB_041 IL_15011.2 | |
| IL_4V9C_256 | 1/CA/504:511, 1/CA/540:541 | SSU/LSU pseudoknot | homologous IL_5J7L_024 NA | |
| IL_4V9C_257 | 1/CA/515:521, 1/CA/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_4V9C_258 | 1/CA/569:575, 1/CA/880:881 | No text annotation | homologous IL_4LFB_022 IL_20847.1 | |
| IL_4V9C_260 | 1/CA/580:584, 1/CA/757:761 | tSH-tHW-tHS | geometric IL_5J7L_027 NA | |
| IL_4V9C_510 | 1/CA/594:596, 1/CA/644:645 | Major groove platform | homologous IL_5J7L_028 NA | |
| IL_4V9C_264 | 1/CA/597:599, 1/CA/639:643 | No text annotation | homologous IL_6CZR_361 NA | |
| IL_4V9C_511 | 1/CA/605:612, 1/CA/628:633 | No text annotation | homologous IL_5J7L_030 NA | |
| IL_4V9C_512 | 1/CA/659:660, 1/CA/745:747 | Single stack bend | homologous IL_5J7L_032 NA | |
| IL_4V9C_513 | 1/CA/662:666, 1/CA/740:743 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 NA | |
| IL_4V9C_270 | 1/CA/684:688, 1/CA/699:706 | Kink-turn | homologous IL_5J7L_035 NA | |
| IL_4V9C_514 | 1/CA/774:778, 1/CA/804:805 | Left turn | homologous IL_5J7L_036 NA | |
| IL_4V9C_515 | 1/CA/779:783, 1/CA/799:803 | tSH-tHW-tHS | homologous IL_5J7L_037 NA | |
| IL_4V9C_274 | 1/CA/887:894, 1/CA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 NA | |
| IL_4V9C_275 | 1/CA/922:923, 1/CA/1393:1395 | Single bulged A | homologous IL_6CZR_147 NA | |
| IL_4V9C_276 | 1/CA/925:927, 1/CA/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_28408.2 | |
| IL_4V9C_277 | 1/CA/933:935, 1/CA/1380:1384 | Minor groove platform | homologous IL_5J7L_041 NA | |
| IL_4V9C_279 | 1/CA/952:954, 1/CA/1226:1229 | Minor groove platform with extra cWW | geometric IL_4WF9_003 IL_82096.1 | |
| IL_4V9C_281 | 1/CA/998:999, 1/CA/1041:1043 | Single stack bend | homologous IL_5J7L_044 NA | |
| IL_4V9C_516 | 1/CA/1003:1006, 1/CA/1023:1037 | No text annotation | ||
| IL_4V9C_285 | 1/CA/1048:1050, 1/CA/1208:1209 | Single bulged U | homologous IL_4LFB_042 IL_97561.2 | |
| IL_4V9C_480 | 1/CA/1052:1056, 1/CA/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_82453.1 | |
| IL_4V9C_287 | 1/CA/1057:1058, 1/CA/1199:1203 | Minor groove platform | homologous IL_5J7L_048 NA | |
| IL_4V9C_288 | 1/CA/1060:1061, 1/CA/1195:1197 | Single bulged A | geometric IL_5J7L_049 NA | |
| IL_4V9C_289 | 1/CA/1061:1063, 1/CA/1193:1195 | Isolated non-canonical cWW pair | geometric IL_4LFB_047 IL_68118.2 | |
| IL_4V9C_292 | 1/CA/1124:1129, 1/CA/1143:1149 | No text annotation | ||
| IL_4V9C_481 | 1/CA/1124:1132, 1/CA/1142:1149 | No text annotation | ||
| IL_4V9C_293 | 1/CA/1129:1133, 1/CA/1141:1143 | No text annotation | geometric IL_4LFB_066 NA | |
| IL_4V9C_517 | 1/CA/1158:1161, 1/CA/1175:1181 | No text annotation | geometric IL_4LFB_050 IL_32376.1 | |
| IL_4V9C_518 | 1/CA/1247:1253, 1/CA/1284:1290 | No text annotation | homologous IL_5J7L_054 NA | |
| IL_4V9C_519 | 1/CA/1254:1258, 1/CA/1277:1283 | No text annotation | ||
| IL_4V9C_298 | 1/CA/1255:1258, 1/CA/1277:1282 | 180 degree turn | homologous IL_5J7L_055 NA | |
| IL_4V9C_299 | 1/CA/1259:1263, 1/CA/1272:1276 | Double sheared with non-canonical cWW | homologous IL_5J7L_056 NA | |
| IL_4V9C_303 | 1/CA/1399:1401, 1/CA/1501:1504 | No text annotation | homologous IL_5J7L_058 NA | |
| IL_4V9C_304 | 1/CA/1401:1404, 1/CA/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_4V9C_305 | 1/CA/1405:1407, 1/CA/1494:1496 | Isolated non-canonical cWW pair | geometric IL_5MWI_004 IL_01003.2 | |
| IL_4V9C_306 | 1/CA/1407:1409, 1/CA/1491:1494 | Decoding loop related | geometric IL_3C3Z_002 IL_53541.1 | |
| IL_4V9C_307 | 1/CA/1412:1414, 1/CA/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 NA | |
| IL_4V9C_308 | 1/CA/1416:1419, 1/CA/1481:1484 | Double sheared | homologous IL_5J7L_062 NA | |
| IL_4V9C_309 | 1/CA/1430:1435, 1/CA/1466:1470 | Triple sheared related | homologous IL_5J7L_063 NA | |
| IL_4V9C_310 | 1/CA/1440:1442, 1/CA/1460:1461 | Single bulged A | homologous IL_5J7L_064 NA | |
| IL_4V9C_311 | 1/CA/1445:1448, 1/CA/1455:1457 | No text annotation | homologous IL_5J7L_065 NA | |
| IL_4V9C_313 | 1/DA/24:30, 1/DA/510:516 | Triple sheared with non-canonical cWW | homologous IL_5J7L_245 NA | |
| IL_4V9C_314 | 1/DA/36:37, 1/DA/442:444 | Single bulged A | homologous IL_5J7L_246 NA | |
| IL_4V9C_520 | 1/DA/43:44, 1/DA/434:436 | Minor groove platform | homologous IL_5J7L_247 NA | |
| IL_4V9C_316 | 1/DA/81:85, 1/DA/97:105 | No text annotation | homologous IL_5J7L_248 NA | |
| IL_4V9C_317 | 1/DA/183:184, 1/DA/212:214 | Single stack bend | homologous IL_5J7L_249 NA | |
| IL_4V9C_318 | 1/DA/188:194, 1/DA/201:208 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5J7L_250 NA | |
| IL_4V9C_319 | 1/DA/239:245, 1/DA/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 NA | |
| IL_4V9C_320 | 1/DA/269:271, 1/DA/366:370 | No text annotation | homologous IL_5J7L_252 NA | |
| IL_4V9C_321 | 1/DA/274:281, 1/DA/359:363 | No text annotation | homologous IL_5J7L_253 NA | |
| IL_4V9C_325 | 1/DA/293:295, 1/DA/343:347 | No text annotation | homologous IL_5J7L_254 NA | |
| IL_4V9C_326 | 1/DA/481:484, 1/DA/496:509 | No text annotation | homologous IL_5J7L_255 NA | |
| IL_4V9C_327 | 1/DA/536:539, 1/DA/554:557 | Double sheared | homologous IL_5J7L_256 NA | |
| IL_4V9C_329 | 1/DA/564:566, 1/DA/575:577 | Isolated non-canonical cWW pair | geometric IL_5J7L_257 NA | |
| IL_4V9C_331 | 1/DA/606:610, 1/DA/618:622 | AAA cross-strand stack | homologous IL_5J7L_258 NA | |
| IL_4V9C_332 | 1/DA/672:674, 1/DA/806:808 | No text annotation | geometric IL_7RQB_017 NA | |
| IL_4V9C_333 | 1/DA/674:678, 1/DA/799:806 | tHW-tHW cross-strand stack | homologous IL_7RQB_018 NA | |
| IL_4V9C_334 | 1/DA/697:698, 1/DA/763:765 | Single bulged A | geometric IL_7RQB_019 NA | |
| IL_4V9C_335 | 1/DA/702:703, 1/DA/728:730 | Single bulged G | geometric IL_5J7L_262 NA | |
| IL_4V9C_336 | 1/DA/703:707, 1/DA/724:728 | Triple sheared | homologous IL_5J7L_263 NA | |
| IL_4V9C_337 | 1/DA/738:740, 1/DA/757:758 | Major groove platform | homologous IL_5J7L_264 NA | |
| IL_4V9C_338 | 1/DA/775:777, 1/DA/787:791 | Multiple bulged bases | geometric IL_5J7L_265 NA | |
| IL_4V9C_339 | 1/DA/837:838, 1/DA/940:942 | Single stack bend | homologous IL_4WF9_028 IL_15011.2 | |
| IL_4V9C_340 | 1/DA/844:847, 1/DA/933:934 | 90 degree turn | homologous IL_5J7L_267 NA | |
| IL_4V9C_486 | 1/DA/844:848, 1/DA/930:934 | No text annotation | homologous IL_5J7L_399 NA | |
| IL_4V9C_341 | 1/DA/847:848, 1/DA/930:933 | Stack outside cWW | geometric IL_5J7L_268 NA | |
| IL_4V9C_342 | 1/DA/850:851, 1/DA/926:928 | Single stack bend | homologous IL_5J7L_269 NA | |
| IL_4V9C_343 | 1/DA/856:862, 1/DA/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_5J7L_270 NA | |
| IL_4V9C_344 | 1/DA/862:863, 1/DA/913:915 | Single bulged G | homologous IL_5J7L_271 NA | |
| IL_4V9C_345 | 1/DA/864:868, 1/DA/909:912 | C-loop with bulged stacked A's | homologous IL_5J7L_272 NA | |
| IL_4V9C_346 | 1/DA/870:872, 1/DA/905:907 | Isolated non-canonical cWW pair | homologous IL_5J7L_273 NA | |
| IL_4V9C_347 | 1/DA/875:879, 1/DA/898:902 | Double sheared with non-canonical cWW | geometric IL_5J7L_274 NA | |
| IL_4V9C_348 | 1/DA/879:881, 1/DA/895:898 | Minor groove platform with extra cWW | geometric IL_4WF9_003 IL_82096.1 | |
| IL_4V9C_349 | 1/DA/994:996, 1/DA/1159:1160 | Single bulged C | homologous IL_5J7L_276 NA | |
| IL_4V9C_350 | 1/DA/998:1002, 1/DA/1153:1157 | UAA/GAN | homologous IL_4WF9_036 IL_08938.1 | |
| IL_4V9C_351 | 1/DA/1004:1011, 1/DA/1150:1151 | SSU/LSU pseudoknot | homologous IL_5J7L_278 NA | |
| IL_4V9C_352 | 1/DA/1011:1013, 1/DA/1149:1150 | Single bulged U | geometric IL_5J7L_279 NA | |
| IL_4V9C_353 | 1/DA/1018:1024, 1/DA/1140:1144 | Kink-turn related | homologous IL_5J7L_280 NA | |
| IL_4V9C_354 | 1/DA/1024:1030, 1/DA/1124:1140 | No text annotation | geometric IL_5J7L_281 NA | |
| IL_4V9C_355 | 1/DA/1031:1034, 1/DA/1121:1123 | Isolated non-canonical cWW pair | homologous IL_5J7L_282 NA | |
| IL_4V9C_356 | 1/DA/1038:1041, 1/DA/1114:1117 | Tandem non-canonical cWW pairs | homologous IL_5J7L_283 NA | |
| IL_4V9C_357 | 1/DA/1043:1051, 1/DA/1108:1112 | Kink-turn | homologous IL_5J7L_284 NA | |
| IL_4V9C_358 | 1/DA/1055:1090, 1/DA/1101:1104 | No text annotation | ||
| IL_4V9C_359 | 1/DA/1196:1198, 1/DA/1247:1250 | Isolated cWS basepair | homologous IL_5J7L_286 NA | |
| IL_4V9C_360 | 1/DA/1202:1206, 1/DA/1240:1243 | No text annotation | homologous IL_5J7L_287 NA | |
| IL_4V9C_361 | 1/DA/1208:1215, 1/DA/1234:1238 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_4V9C_362 | 1/DA/1262:1269, 1/DA/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 NA | |
| IL_4V9C_363 | 1/DA/1310:1313, 1/DA/1603:1604 | Major groove platform; stack outside cWW | homologous IL_4WF9_049 IL_74641.2 | |
| IL_4V9C_364 | 1/DA/1319:1323, 1/DA/1331:1333 | C-loop | homologous IL_5J7L_291 NA | |
| IL_4V9C_365 | 1/DA/1351:1355, 1/DA/1376:1380 | UAA/GAN | homologous IL_5J7L_292 NA | |
| IL_4V9C_367 | 1/DA/1357:1361, 1/DA/1370:1374 | tSH-tHW-tHS | geometric IL_5J7L_293 NA | |
| IL_4V9C_369 | 1/DA/1413:1416, 1/DA/1582:1589 | No text annotation | ||
| IL_4V9C_370 | 1/DA/1417:1421, 1/DA/1577:1581 | UAA/GAN | homologous IL_5J7L_295 NA | |
| IL_4V9C_371 | 1/DA/1432:1435, 1/DA/1557:1561 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 NA | |
| IL_4V9C_372 | 1/DA/1437:1440, 1/DA/1551:1555 | tSH-tHW | homologous IL_5J7L_297 NA | |
| IL_4V9C_373 | 1/DA/1450:1451, 1/DA/1459:1461 | Single bulged U | geometric IL_5J7L_298 NA | |
| IL_4V9C_374 | 1/DA/1468:1471, 1/DA/1520:1524 | No text annotation | homologous IL_5J7L_299 NA | |
| IL_4V9C_375 | 1/DA/1474:1478, 1/DA/1513:1517 | tSH-tHW-tHS | homologous IL_5J7L_300 NA | |
| IL_4V9C_376 | 1/DA/1481:1482, 1/DA/1507:1510 | 180 degree turn | geometric IL_5J7L_301 NA | |
| IL_4V9C_487 | 1/DA/1487:1491, 1/DA/1499:1502 | Tandem non-canonical cWW pairs | geometric IL_1GID_008 NA | |
| IL_4V9C_379 | 1/DA/1488:1491, 1/DA/1499:1501 | No text annotation | ||
| IL_4V9C_380 | 1/DA/1526:1529, 1/DA/1542:1546 | UAA/GAN variation | homologous IL_5J7L_303 NA | |
| IL_4V9C_381 | 1/DA/1651:1656, 1/DA/2004:2006 | No text annotation | homologous IL_5J7L_304 NA | |
| IL_4V9C_382 | 1/DA/1663:1665, 1/DA/1995:1997 | Isolated tWW turn | homologous IL_5J7L_305 NA | |
| IL_4V9C_383 | 1/DA/1666:1669, 1/DA/1993:1994 | Major groove platform; stack outside cWW | homologous IL_5J7L_306 NA | |
| IL_4V9C_488 | 1/DA/1666:1674, 1/DA/1990:1994 | No text annotation | homologous IL_5J7L_386 NA | |
| IL_4V9C_384 | 1/DA/1669:1674, 1/DA/1990:1993 | Intercalated tWH | geometric IL_5J7L_307 NA | |
| IL_4V9C_385 | 1/DA/1686:1691, 1/DA/1696:1702 | tSH-tSH-tHH-tHS | homologous IL_5J7L_308 NA | |
| IL_4V9C_386 | 1/DA/1712:1718, 1/DA/1742:1746 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_5J7L_309 NA | |
| IL_4V9C_387 | 1/DA/1770:1771, 1/DA/1980:1982 | Single bulged A | homologous IL_5J7L_312 NA | |
| IL_4V9C_388 | 1/DA/1798:1804, 1/DA/1813:1821 | Kink-turn related | homologous IL_5J7L_313 NA | |
| IL_4V9C_389 | 1/DA/1837:1840, 1/DA/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 NA | |
| IL_4V9C_390 | 1/DA/1841:1842, 1/DA/1898:1901 | Major groove intercalation | homologous IL_7A0S_067 IL_77710.1 | |
| IL_4V9C_391 | 1/DA/1846:1849, 1/DA/1893:1894 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_316 NA | |
| IL_4V9C_489 | 1/DA/1851:1860, 1/DA/1882:1891 | No text annotation | homologous IL_5J7L_387 NA | |
| IL_4V9C_392 | 1/DA/1864:1867, 1/DA/1874:1878 | UAA/GAN related | homologous IL_5J7L_317 NA | |
| IL_4V9C_393 | 1/DA/1933:1934, 1/DA/1964:1967 | Bulged stacked bases | homologous IL_7RQB_076 NA | |
| IL_4V9C_394 | 1/DA/1934:1945, 1/DA/1961:1964 | No text annotation | geometric IL_4WF9_077 IL_84014.1 | |
| IL_4V9C_395 | 1/DA/2050:2052, 1/DA/2617:2618 | Major groove platform | homologous IL_5J7L_320 NA | |
| IL_4V9C_396 | 1/DA/2054:2056, 1/DA/2612:2615 | No text annotation | homologous IL_5J7L_321 NA | |
| IL_4V9C_397 | 1/DA/2067:2069, 1/DA/2442:2443 | Single bulged U | homologous IL_7A0S_075 IL_97561.2 | |
| IL_4V9C_398 | 1/DA/2070:2071, 1/DA/2438:2441 | Minor groove platform | homologous IL_7A0S_076 IL_34520.2 | |
| IL_4V9C_399 | 1/DA/2081:2083, 1/DA/2236:2239 | Isolated tHS basepair with bulges | homologous IL_5J7L_325 NA | |
| IL_4V9C_400 | 1/DA/2085:2087, 1/DA/2232:2234 | Isolated non-canonical cWW pair | homologous IL_5J7L_326 NA | |
| IL_4V9C_521 | 1/DA/2096:2123, 1/DA/2175:2193 | No text annotation | ||
| IL_4V9C_491 | 1/DA/2201:2204, 1/DA/2220:2222 | Isolated non-canonical cWW with bulges | geometric IL_5ML7_010 IL_68118.2 | |
| IL_4V9C_404 | 1/DA/2202:2204, 1/DA/2220:2221 | Single bulged U | homologous IL_5J7L_331 NA | |
| IL_4V9C_405 | 1/DA/2350:2353, 1/DA/2364:2367 | Double sheared | homologous IL_5J7L_333 NA | |
| IL_4V9C_407 | 1/DA/2401:2403, 1/DA/2414:2415 | Single bulged U | geometric IL_5LYS_008 IL_97561.2 | |
| IL_4V9C_408 | 1/DA/2453:2454, 1/DA/2498:2500 | Single stack bend | geometric IL_4WF9_089 IL_15011.2 | |
| IL_4V9C_409 | 1/DA/2454:2455, 1/DA/2496:2498 | Major groove platform | homologous IL_7RQB_092 NA | |
| IL_4V9C_410 | 1/DA/2457:2459, 1/DA/2493:2494 | Major groove platform | homologous IL_4WF9_091 IL_48076.8 | |
| IL_4V9C_411 | 1/DA/2459:2461, 1/DA/2489:2493 | Major groove minor groove platform with extra cWW | geometric IL_7A0S_086 IL_36931.2 | |
| IL_4V9C_412 | 1/DA/2466:2470, 1/DA/2480:2484 | Double sheared with non-canonical cWW | homologous IL_5J7L_338 NA | |
| IL_4V9C_413 | 1/DA/2507:2508, 1/DA/2580:2582 | Major groove platform | homologous IL_7A0S_088 IL_46637.2 | |
| IL_4V9C_414 | 1/DA/2510:2512, 1/DA/2574:2578 | Isolated non-canonical cWW with bulges | homologous IL_5J7L_340 NA | |
| IL_4V9C_415 | 1/DA/2512:2513, 1/DA/2571:2574 | No text annotation | geometric IL_5J7L_341 NA | |
| IL_4V9C_416 | 1/DA/2522:2523, 1/DA/2540:2543 | Major groove platform with intercalation | homologous IL_5J7L_342 NA | |
| IL_4V9C_417 | 1/DA/2591:2592, 1/DA/2601:2603 | Single bulged A | homologous IL_5J7L_344 NA | |
| IL_4V9C_418 | 1/DA/2636:2640, 1/DA/2774:2782 | tSH-tHS-tHW | homologous IL_5J7L_345 NA | |
| IL_4V9C_419 | 1/DA/2652:2658, 1/DA/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_5J7L_346 NA | |
| IL_4V9C_420 | 1/DA/2680:2684, 1/DA/2725:2727 | C-loop | homologous IL_5J7L_347 NA | |
| IL_4V9C_421 | 1/DA/2687:2691, 1/DA/2718:2722 | UAA/GAN related, with intercalation | homologous IL_5J7L_348 NA | |
| IL_4V9C_422 | 1/DA/2695:2696, 1/DA/2711:2714 | Multiple bulged bases | homologous IL_5J7L_349 NA | |
| IL_4V9C_423 | 1/DA/2737:2742, 1/DA/2762:2767 | UAA/GAN with extra cWW | homologous IL_5J7L_350 NA | |
| IL_4V9C_425 | 1/DA/2806:2811, 1/DA/2889:2892 | No text annotation | homologous IL_5J7L_351 NA | |
| IL_4V9C_426 | 1/DA/2838:2839, 1/DA/2878:2880 | Major groove intercalation | homologous IL_5J7L_352 NA | |
| IL_4V9C_427 | 1/DA/2843:2846, 1/DA/2870:2874 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 NA | |
| IL_4V9C_428 | 1/DA/2847:2852, 1/DA/2865:2869 | tHS double platform | homologous IL_5J7L_354 NA | |
| IL_4V9C_429 | 1/DB/17:18, 1/DB/65:67 | Major groove intercalation | homologous IL_5J7L_355 NA | |
| IL_4V9C_430 | 1/DB/23:28, 1/DB/56:60 | No text annotation | homologous IL_5J7L_356 NA | |
| IL_4V9C_431 | 1/DB/30:31, 1/DB/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_357 NA | |
| IL_4V9C_432 | 1/DB/34:38, 1/DB/44:48 | Symmetric double minor groove platform | homologous IL_5J7L_358 NA | |
| IL_4V9C_433 | 1/DB/71:79, 1/DB/97:105 | Bacterial 5S Loop E | homologous IL_5J7L_359 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V9C_434 | Tandem non-canonical cWW pairs | ||
| IL_4V9C_001 | Isolated non-canonical cWW pair | ||
| IL_4V9C_008 | Isolated non-canonical cWW pair | ||
| IL_4V9C_010 | Tandem non-canonical cWW pairs | ||
| IL_4V9C_435 | Tandem non-canonical cWW pairs | ||
| IL_4V9C_014 | No text annotation | ||
| IL_4V9C_015 | Isolated non-canonical cWW pair | ||
| IL_4V9C_016 | Isolated non-canonical cWW pair | ||
| IL_4V9C_020 | Isolated non-canonical cWW pair | ||
| IL_4V9C_021 | No text annotation | ||
| IL_4V9C_022 | Isolated non-canonical cWW pair | ||
| IL_4V9C_436 | Single bulged G, near cWW | ||
| IL_4V9C_025 | Tandem non-canonical cWW pairs | ||
| IL_4V9C_026 | No text annotation | ||
| IL_4V9C_438 | No text annotation | ||
| IL_4V9C_028 | No text annotation | ||
| IL_4V9C_031 | Isolated non-canonical cWW pair | ||
| IL_4V9C_032 | No text annotation | ||
| IL_4V9C_034 | No text annotation | ||
| IL_4V9C_038 | Isolated non-canonical cWW pair | ||
| IL_4V9C_039 | Isolated non-canonical cWW pair | ||
| IL_4V9C_440 | No text annotation | ||
| IL_4V9C_043 | Isolated non-canonical cWW pair | ||
| IL_4V9C_048 | Other IL | ||
| IL_4V9C_050 | Isolated non-canonical cWW pair | ||
| IL_4V9C_051 | No text annotation | ||
| IL_4V9C_056 | Isolated non-canonical cWW pair | ||
| IL_4V9C_057 | Isolated non-canonical cWW pair | ||
| IL_4V9C_059 | Isolated non-canonical cWW pair | ||
| IL_4V9C_441 | No text annotation | ||
| IL_4V9C_061 | No text annotation | ||
| IL_4V9C_062 | Tandem non-canonical cWW pairs | ||
| IL_4V9C_442 | No text annotation | ||
| IL_4V9C_065 | No text annotation | ||
| IL_4V9C_443 | No text annotation | ||
| IL_4V9C_069 | No text annotation | ||
| IL_4V9C_070 | No text annotation | ||
| IL_4V9C_071 | Isolated non-canonical cWW pair | ||
| IL_4V9C_075 | Isolated cWH basepair | ||
| IL_4V9C_077 | Isolated non-canonical cWW pair | ||
| IL_4V9C_078 | Isolated non-canonical cWW pair | ||
| IL_4V9C_083 | Isolated non-canonical cWW pair | ||
| IL_4V9C_086 | Isolated non-canonical cWW pair | ||
| IL_4V9C_088 | Intercalated cWW | ||
| IL_4V9C_446 | No text annotation | ||
| IL_4V9C_091 | Isolated non-canonical cWW pair | ||
| IL_4V9C_095 | No text annotation | ||
| IL_4V9C_096 | Isolated non-canonical cWW pair | ||
| IL_4V9C_098 | Isolated non-canonical cWW pair | ||
| IL_4V9C_102 | Isolated non-canonical cWW pair | ||
| IL_4V9C_447 | No text annotation | ||
| IL_4V9C_106 | Isolated non-canonical cWW pair | ||
| IL_4V9C_114 | No text annotation | ||
| IL_4V9C_449 | No text annotation | ||
| IL_4V9C_121 | Isolated non-canonical cWW pair | ||
| IL_4V9C_124 | No text annotation | ||
| IL_4V9C_132 | Isolated cWH basepair | ||
| IL_4V9C_138 | No text annotation | ||
| IL_4V9C_139 | No text annotation | ||
| IL_4V9C_140 | No text annotation | ||
| IL_4V9C_142 | tSH-tHH-tHS | ||
| IL_4V9C_144 | No text annotation | ||
| IL_4V9C_453 | No text annotation | ||
| IL_4V9C_150 | No text annotation | ||
| IL_4V9C_151 | Isolated non-canonical cWW pair | ||
| IL_4V9C_152 | Isolated non-canonical cWW pair | ||
| IL_4V9C_155 | No text annotation | ||
| IL_4V9C_156 | Isolated non-canonical cWW pair | ||
| IL_4V9C_455 | Partly complementary | ||
| IL_4V9C_456 | No text annotation | ||
| IL_4V9C_161 | No text annotation | ||
| IL_4V9C_163 | Tandem non-canonical cWW pairs | ||
| IL_4V9C_165 | Isolated non-canonical cWW pair | ||
| IL_4V9C_459 | Tandem non-canonical cWW pairs with near WC pairs | ||
| IL_4V9C_166 | Partly complementary | ||
| IL_4V9C_460 | Triple sheared related | ||
| IL_4V9C_168 | No text annotation | ||
| IL_4V9C_169 | No text annotation | ||
| IL_4V9C_173 | Isolated non-canonical cWW pair | ||
| IL_4V9C_463 | No text annotation | ||
| IL_4V9C_190 | Tandem non-canonical cWW pairs | ||
| IL_4V9C_465 | No text annotation | ||
| IL_4V9C_193 | No text annotation | ||
| IL_4V9C_195 | No text annotation | ||
| IL_4V9C_197 | Isolated non-canonical cWW pair | ||
| IL_4V9C_203 | No text annotation | ||
| IL_4V9C_211 | No text annotation | ||
| IL_4V9C_212 | Isolated non-canonical cWW pair | ||
| IL_4V9C_223 | Tandem non-canonical cWW pairs | ||
| IL_4V9C_225 | Tandem non-canonical cWW pairs | ||
| IL_4V9C_226 | No text annotation | ||
| IL_4V9C_227 | No text annotation | ||
| IL_4V9C_228 | No text annotation | ||
| IL_4V9C_236 | Isolated non-canonical cWW pair | ||
| IL_4V9C_239 | Isolated cWH basepair | ||
| IL_4V9C_240 | No text annotation | ||
| IL_4V9C_241 | Isolated cWS basepair | ||
| IL_4V9C_470 | No text annotation | ||
| IL_4V9C_247 | No text annotation | ||
| IL_4V9C_249 | Tandem non-canonical cWW pairs | ||
| IL_4V9C_251 | No text annotation | ||
| IL_4V9C_254 | Tandem non-canonical cWW pairs | ||
| IL_4V9C_255 | Isolated non-canonical cWW pair | ||
| IL_4V9C_259 | Isolated non-canonical cWW pair | ||
| IL_4V9C_474 | No text annotation | ||
| IL_4V9C_261 | Isolated non-canonical cWW pair | ||
| IL_4V9C_262 | Isolated cWH basepair | ||
| IL_4V9C_263 | Major groove platform with extra pair | ||
| IL_4V9C_475 | No text annotation | ||
| IL_4V9C_265 | No text annotation | ||
| IL_4V9C_266 | No text annotation | ||
| IL_4V9C_267 | Isolated non-canonical cWW pair | ||
| IL_4V9C_268 | No text annotation | ||
| IL_4V9C_476 | No text annotation | ||
| IL_4V9C_269 | No text annotation | ||
| IL_4V9C_477 | Kink-turn | ||
| IL_4V9C_271 | Isolated non-canonical cWW pair | ||
| IL_4V9C_478 | No text annotation | ||
| IL_4V9C_272 | Other IL | ||
| IL_4V9C_273 | tSH-tHW-tHS-cWW | ||
| IL_4V9C_479 | Isolated non-canonical cWW with bulges | ||
| IL_4V9C_278 | Isolated non-canonical cWW pair | ||
| IL_4V9C_280 | Isolated non-canonical cWW pair | ||
| IL_4V9C_282 | No text annotation | ||
| IL_4V9C_283 | Isolated non-canonical cWW pair | ||
| IL_4V9C_284 | Tandem non-canonical cWW pairs | ||
| IL_4V9C_286 | tSH-tHW | ||
| IL_4V9C_290 | Isolated non-canonical cWW pair | ||
| IL_4V9C_291 | Tandem non-canonical cWW pairs | ||
| IL_4V9C_482 | No text annotation | ||
| IL_4V9C_294 | No text annotation | ||
| IL_4V9C_295 | Tandem non-canonical cWW pairs | ||
| IL_4V9C_296 | No text annotation | ||
| IL_4V9C_297 | Isolated non-canonical cWW pair | ||
| IL_4V9C_483 | No text annotation | ||
| IL_4V9C_300 | Isolated non-canonical cWW pair | ||
| IL_4V9C_301 | Isolated non-canonical cWW pair | ||
| IL_4V9C_302 | Isolated non-canonical cWW pair | ||
| IL_4V9C_484 | No text annotation | ||
| IL_4V9C_312 | No text annotation | ||
| IL_4V9C_315 | Minor groove platform with extra cWW | ||
| IL_4V9C_485 | No text annotation | ||
| IL_4V9C_322 | Isolated non-canonical cWW pair | ||
| IL_4V9C_323 | Isolated non-canonical cWW pair | ||
| IL_4V9C_324 | Isolated non-canonical cWW contact | ||
| IL_4V9C_328 | Isolated non-canonical cWW pair | ||
| IL_4V9C_330 | Isolated non-canonical cWW pair | ||
| IL_4V9C_366 | Isolated non-canonical cWW pair | ||
| IL_4V9C_368 | No text annotation | ||
| IL_4V9C_377 | No text annotation | ||
| IL_4V9C_378 | Isolated non-canonical cWW pair | ||
| IL_4V9C_401 | Isolated non-canonical cWW pair | ||
| IL_4V9C_490 | No text annotation | ||
| IL_4V9C_402 | No text annotation | ||
| IL_4V9C_403 | No text annotation | ||
| IL_4V9C_406 | Isolated non-canonical cWW pair | ||
| IL_4V9C_424 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4V9C_036 | 1/AA/46:47, 1/AA/361:369, 1/AA/392:395 | No text annotation | ||
| J3_4V9C_037 | 1/AA/46:52, 1/AA/359:369, 1/AA/392:395 | No text annotation | ||
| J3_4V9C_077 | 1/AA/142:144, 1/AA/178:198, 1/AA/219:221 | No text annotation | ||
| J3_4V9C_039 | 1/AA/586:588, 1/AA/651:654, 1/AA/754:755 | No text annotation | geometric J3_5J7L_002 NA | |
| J3_4V9C_040 | 1/AA/586:588, 1/AA/651:655, 1/AA/751:755 | No text annotation | homologous J3_5J7L_051 NA | |
| J3_4V9C_078 | 1/AA/672:673, 1/AA/717:725, 1/AA/732:734 | No text annotation | homologous J3_5J7L_003 NA | |
| J3_4V9C_001 | 1/AA/826:829, 1/AA/857:861, 1/AA/868:874 | No text annotation | homologous J3_5J7L_004 NA | |
| J3_4V9C_002 | 1/AA/936:939, 1/AA/1344:1350, 1/AA/1372:1379 | No text annotation | geometric J3_5J7L_052 NA | |
| J3_4V9C_043 | 1/AA/941:946, 1/AA/1235:1237, 1/AA/1337:1342 | No text annotation | ||
| J3_4V9C_003 | 1/AA/943:946, 1/AA/1235:1237, 1/AA/1337:1340 | No text annotation | homologous J3_4LFB_003 J3_44359.1 | |
| J3_4V9C_004 | 1/AA/955:962, 1/AA/973:984, 1/AA/1221:1225 | No text annotation | homologous J3_5J7L_006 NA | |
| J3_4V9C_005 | 1/AA/990:993, 1/AA/1045:1047, 1/AA/1210:1215 | No text annotation | homologous J3_4LFB_005 J3_84394.1 | |
| J3_4V9C_079 | 1/AA/990:997, 1/AA/1044:1047, 1/AA/1210:1215 | No text annotation | homologous J3_5J7L_053 NA | |
| J3_4V9C_006 | 1/AA/1063:1068, 1/AA/1107:1113, 1/AA/1187:1193 | No text annotation | homologous J3_5J7L_008 NA | |
| J3_4V9C_045 | 1/AA/1073:1074, 1/AA/1083:1087, 1/AA/1098:1102 | No text annotation | homologous J3_6CZR_024 NA | |
| J3_4V9C_007 | 1/AA/1116:1118, 1/AA/1155:1158, 1/AA/1181:1184 | No text annotation | homologous J3_5J7L_010 NA | |
| J3_4V9C_080 | 1/AA/1116:1118, 1/AA/1155:1161, 1/AA/1175:1184 | No text annotation | homologous J3_4LFB_018 J3_40706.1 | |
| J3_4V9C_008 | 1/AA/1237:1241, 1/AA/1296:1303, 1/AA/1334:1337 | No text annotation | homologous J3_5J7L_011 NA | |
| J3_4V9C_047 | 1/BA/30:31, 1/BA/474:484, 1/BA/496:510 | No text annotation | homologous J3_5J7L_066 NA | |
| J3_4V9C_048 | 1/BA/32:35, 1/BA/445:461, 1/BA/468:473 | No text annotation | homologous J3_5J7L_067 NA | |
| J3_4V9C_049 | 1/BA/56:57, 1/BA/70:76, 1/BA/110:114 | No text annotation | homologous J3_5J7L_037 NA | |
| J3_4V9C_050 | 1/BA/297:301, 1/BA/316:325, 1/BA/337:341 | No text annotation | homologous J3_5J7L_068 NA | |
| J3_4V9C_009 | 1/BA/683:689, 1/BA/773:775, 1/BA/791:794 | No text annotation | homologous J3_5J7L_038 NA | |
| J3_4V9C_010 | 1/BA/698:700, 1/BA/732:736, 1/BA/760:763 | No text annotation | homologous J3_5J7L_039 NA | |
| J3_4V9C_081 | 1/BA/1055:1057, 1/BA/1081:1090, 1/BA/1101:1104 | No text annotation | ||
| J3_4V9C_012 | 1/BA/1298:1303, 1/BA/1625:1627, 1/BA/1639:1642 | No text annotation | homologous J3_5J7L_041 NA | |
| J3_4V9C_051 | 1/BA/1306:1309, 1/BA/1605:1611, 1/BA/1620:1622 | No text annotation | homologous J3_5J7L_042 NA | |
| J3_4V9C_052 | 1/BA/1344:1350, 1/BA/1381:1385, 1/BA/1402:1403 | No text annotation | homologous J3_9DFE_012 J3_94309.1 | |
| J3_4V9C_082 | 1/BA/1424:1429, 1/BA/1564:1565, 1/BA/1568:1574 | No text annotation | homologous J3_5J7L_069 NA | |
| J3_4V9C_014 | 1/BA/2091:2093, 1/BA/2196:2200, 1/BA/2223:2228 | Kink-turn 3-way junction | homologous J3_5J7L_044 NA | |
| J3_4V9C_055 | 1/BA/2282:2284, 1/BA/2384:2395, 1/BA/2421:2427 | No text annotation | homologous J3_5J7L_070 NA | |
| J3_4V9C_083 | 1/BA/2295:2299, 1/BA/2317:2323, 1/BA/2332:2337 | No text annotation | ||
| J3_4V9C_016 | 1/BA/2517:2520, 1/BA/2545:2547, 1/BA/2561:2567 | No text annotation | homologous J3_5J7L_046 NA | |
| J3_4V9C_056 | 1/BA/2789:2791, 1/BA/2805:2806, 1/BA/2892:2894 | No text annotation | homologous J3_5J7L_047 NA | |
| J3_4V9C_017 | 1/BA/2812:2815, 1/BA/2831:2836, 1/BA/2882:2888 | No text annotation | homologous J3_5J7L_048 NA | |
| J3_4V9C_018 | 1/BB/10:16, 1/BB/68:70, 1/BB/106:110 | No text annotation | geometric J3_5J7L_049 NA | |
| J3_4V9C_058 | 1/CA/46:47, 1/CA/361:367, 1/CA/393:395 | No text annotation | geometric J3_8C3A_082 NA | |
| J3_4V9C_059 | 1/CA/46:52, 1/CA/359:367, 1/CA/393:395 | No text annotation | homologous J3_5J7L_050 NA | |
| J3_4V9C_019 | 1/CA/586:588, 1/CA/651:655, 1/CA/751:755 | No text annotation | geometric J3_5J7L_051 NA | |
| J3_4V9C_061 | 1/CA/670:680, 1/CA/710:725, 1/CA/732:736 | No text annotation | ||
| J3_4V9C_020 | 1/CA/826:829, 1/CA/857:861, 1/CA/868:874 | No text annotation | homologous J3_5J7L_004 NA | |
| J3_4V9C_021 | 1/CA/936:939, 1/CA/1344:1350, 1/CA/1372:1379 | No text annotation | geometric J3_4LFB_002 J3_85722.1 | |
| J3_4V9C_084 | 1/CA/955:962, 1/CA/973:984, 1/CA/1221:1225 | No text annotation | homologous J3_5J7L_006 NA | |
| J3_4V9C_023 | 1/CA/990:997, 1/CA/1044:1047, 1/CA/1210:1215 | No text annotation | homologous J3_5J7L_053 NA | |
| J3_4V9C_065 | 1/CA/1061:1068, 1/CA/1107:1113, 1/CA/1187:1195 | No text annotation | ||
| J3_4V9C_024 | 1/CA/1063:1068, 1/CA/1107:1113, 1/CA/1187:1193 | No text annotation | geometric J3_4LFB_007 J3_01343.1 | |
| J3_4V9C_025 | 1/CA/1073:1075, 1/CA/1082:1087, 1/CA/1098:1102 | No text annotation | ||
| J3_4V9C_085 | 1/CA/1116:1118, 1/CA/1155:1158, 1/CA/1181:1184 | No text annotation | geometric J3_5J7L_010 NA | |
| J3_4V9C_086 | 1/CA/1116:1118, 1/CA/1155:1161, 1/CA/1175:1184 | No text annotation | homologous J3_4LFB_018 J3_40706.1 | |
| J3_4V9C_067 | 1/CV/6:10, 1/CV/25:27, 1/CV/43:67 | No text annotation | ||
| J3_4V9C_068 | 1/DA/30:31, 1/DA/474:481, 1/DA/509:510 | No text annotation | geometric J3_5J7L_036 NA | |
| J3_4V9C_069 | 1/DA/30:31, 1/DA/474:484, 1/DA/496:510 | No text annotation | homologous J3_5J7L_066 NA | |
| J3_4V9C_070 | 1/DA/32:35, 1/DA/445:461, 1/DA/468:473 | No text annotation | homologous J3_5J7L_067 NA | |
| J3_4V9C_071 | 1/DA/56:57, 1/DA/70:76, 1/DA/110:114 | No text annotation | homologous J3_5J7L_037 NA | |
| J3_4V9C_072 | 1/DA/297:301, 1/DA/316:325, 1/DA/337:341 | No text annotation | homologous J3_5J7L_068 NA | |
| J3_4V9C_027 | 1/DA/683:689, 1/DA/773:775, 1/DA/791:794 | No text annotation | homologous J3_7RQB_004 NA | |
| J3_4V9C_028 | 1/DA/698:700, 1/DA/732:736, 1/DA/760:763 | No text annotation | homologous J3_5J7L_039 NA | |
| J3_4V9C_029 | 1/DA/1298:1303, 1/DA/1625:1627, 1/DA/1639:1642 | No text annotation | homologous J3_5J7L_041 NA | |
| J3_4V9C_030 | 1/DA/1306:1309, 1/DA/1605:1611, 1/DA/1620:1622 | No text annotation | homologous J3_5J7L_042 NA | |
| J3_4V9C_073 | 1/DA/1344:1349, 1/DA/1382:1385, 1/DA/1402:1403 | No text annotation | homologous J3_5J7L_043 NA | |
| J3_4V9C_087 | 1/DA/1424:1429, 1/DA/1564:1565, 1/DA/1568:1574 | No text annotation | homologous J3_5J7L_069 NA | |
| J3_4V9C_031 | 1/DA/2091:2093, 1/DA/2196:2200, 1/DA/2223:2228 | Kink-turn 3-way junction | homologous J3_5J7L_044 NA | |
| J3_4V9C_075 | 1/DA/2282:2284, 1/DA/2384:2395, 1/DA/2421:2427 | No text annotation | homologous J3_5J7L_070 NA | |
| J3_4V9C_032 | 1/DA/2295:2299, 1/DA/2317:2323, 1/DA/2332:2337 | No text annotation | homologous J3_5J7L_071 NA | |
| J3_4V9C_033 | 1/DA/2517:2520, 1/DA/2545:2547, 1/DA/2561:2567 | No text annotation | homologous J3_5J7L_046 NA | |
| J3_4V9C_076 | 1/DA/2789:2791, 1/DA/2805:2806, 1/DA/2892:2894 | No text annotation | homologous J3_5J7L_047 NA | |
| J3_4V9C_034 | 1/DA/2812:2815, 1/DA/2831:2836, 1/DA/2882:2888 | No text annotation | homologous J3_5J7L_048 NA | |
| J3_4V9C_035 | 1/DB/10:16, 1/DB/68:70, 1/DB/106:110 | No text annotation | homologous J3_5J7L_049 NA | |
| J4_4V9C_001 | 1/AA/115:122, 1/AA/239:240, 1/AA/286:289, 1/AA/311:312 | No text annotation | homologous J4_5J7L_001 NA | |
| J4_4V9C_002 | 1/AA/575:577, 1/AA/764:769, 1/AA/810:821, 1/AA/879:880 | No text annotation | homologous J4_5J7L_003 NA | |
| J4_4V9C_003 | 1/AV/7:10, 1/AV/25:27, 1/AV/43:49, 1/AV/65:66 | tRNA junction | homologous J4_3WFS_001 J4_36296.3 | |
| J4_4V9C_004 | 1/BA/268:269, 1/BA/370:375, 1/BA/399:406, 1/BA/421:424 | No text annotation | homologous J4_5J7L_018 NA | |
| J4_4V9C_005 | 1/BA/297:301, 1/BA/316:319, 1/BA/323:325, 1/BA/337:341 | No text annotation | homologous J4_5J7L_019 NA | |
| J4_4V9C_006 | 1/BA/601:604, 1/BA/624:628, 1/BA/635:638, 1/BA/650:656 | No text annotation | homologous J4_5J7L_020 NA | |
| J4_4V9C_007 | 1/BA/1270:1276, 1/BA/1294:1295, 1/BA/1645:1648, 1/BA/2009:2010 | No text annotation | homologous J4_5J7L_021 NA | |
| J4_4V9C_008 | 1/BA/1310:1314, 1/BA/1338:1343, 1/BA/1404:1405, 1/BA/1597:1604 | No text annotation | homologous J4_5J7L_022 NA | |
| J4_4V9C_009 | 1/BA/1313:1314, 1/BA/1338:1343, 1/BA/1404:1405, 1/BA/1597:1603 | No text annotation | homologous J4_5J7L_023 NA | |
| J4_4V9C_030 | 1/BA/1444:1445, 1/BA/1466:1467, 1/BA/1525:1526, 1/BA/1546:1547 | No text annotation | homologous J4_5J7L_024 NA | |
| J4_4V9C_010 | 1/BA/1444:1445, 1/BA/1466:1468, 1/BA/1524:1526, 1/BA/1546:1547 | No text annotation | ||
| J4_4V9C_011 | 1/BA/1772:1776, 1/BA/1788:1792, 1/BA/1827:1830, 1/BA/1975:1979 | No text annotation | homologous J4_5J7L_025 NA | |
| J4_4V9C_012 | 1/BA/1833:1835, 1/BA/1905:1906, 1/BA/1924:1933, 1/BA/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_42306.1 | |
| J4_4V9C_013 | 1/BA/2285:2289, 1/BA/2343:2347, 1/BA/2370:2372, 1/BA/2381:2383 | No text annotation | homologous J4_5J7L_027 NA | |
| J4_4V9C_014 | 1/BA/2643:2646, 1/BA/2674:2676, 1/BA/2731:2735, 1/BA/2769:2771 | No text annotation | homologous J4_5J7L_028 NA | |
| J4_4V9C_015 | 1/CA/115:122, 1/CA/239:240, 1/CA/286:289, 1/CA/311:312 | No text annotation | homologous J4_5J7L_001 NA | |
| J4_4V9C_031 | 1/CA/142:146, 1/CA/176:184, 1/CA/193:198, 1/CA/219:221 | No text annotation | ||
| J4_4V9C_017 | 1/CA/575:577, 1/CA/764:769, 1/CA/810:821, 1/CA/879:880 | No text annotation | homologous J4_5J7L_003 NA | |
| J4_4V9C_018 | 1/CA/943:946, 1/CA/1235:1241, 1/CA/1296:1310, 1/CA/1327:1340 | No text annotation | ||
| J4_4V9C_019 | 1/DA/268:269, 1/DA/370:375, 1/DA/399:406, 1/DA/421:424 | No text annotation | homologous J4_5J7L_018 NA | |
| J4_4V9C_020 | 1/DA/297:301, 1/DA/316:319, 1/DA/323:325, 1/DA/337:341 | No text annotation | homologous J4_5J7L_019 NA | |
| J4_4V9C_021 | 1/DA/601:604, 1/DA/624:628, 1/DA/635:638, 1/DA/650:656 | No text annotation | homologous J4_5J7L_020 NA | |
| J4_4V9C_022 | 1/DA/1270:1276, 1/DA/1294:1295, 1/DA/1645:1648, 1/DA/2009:2010 | No text annotation | homologous J4_5J7L_021 NA | |
| J4_4V9C_023 | 1/DA/1310:1314, 1/DA/1338:1343, 1/DA/1404:1405, 1/DA/1597:1604 | No text annotation | homologous J4_5J7L_022 NA | |
| J4_4V9C_024 | 1/DA/1313:1314, 1/DA/1338:1343, 1/DA/1404:1405, 1/DA/1597:1603 | No text annotation | homologous J4_5J7L_023 NA | |
| J4_4V9C_025 | 1/DA/1444:1445, 1/DA/1466:1467, 1/DA/1525:1526, 1/DA/1546:1547 | No text annotation | homologous J4_5J7L_024 NA | |
| J4_4V9C_026 | 1/DA/1772:1776, 1/DA/1788:1792, 1/DA/1827:1830, 1/DA/1975:1979 | No text annotation | homologous J4_5J7L_025 NA | |
| J4_4V9C_027 | 1/DA/1833:1835, 1/DA/1905:1906, 1/DA/1924:1933, 1/DA/1967:1972 | No text annotation | homologous J4_5J7L_026 NA | |
| J4_4V9C_028 | 1/DA/2285:2289, 1/DA/2343:2347, 1/DA/2370:2372, 1/DA/2381:2383 | No text annotation | homologous J4_5J7L_027 NA | |
| J4_4V9C_029 | 1/DA/2643:2646, 1/DA/2674:2676, 1/DA/2731:2735, 1/DA/2769:2771 | No text annotation | homologous J4_5J7L_028 NA | |
| J5_4V9C_001 | 1/AA/36:39, 1/AA/403:406, 1/AA/436:440, 1/AA/497:500, 1/AA/545:548 | No text annotation | homologous J5_5J7L_001 NA | |
| J5_4V9C_002 | 1/AA/36:39, 1/AA/403:406, 1/AA/436:442, 1/AA/492:500, 1/AA/545:548 | No text annotation | homologous J5_5J7L_002 NA | |
| J5_4V9C_003 | 1/AA/58:61, 1/AA/106:113, 1/AA/314:316, 1/AA/337:339, 1/AA/350:354 | No text annotation | homologous J5_5J7L_003 NA | |
| J5_4V9C_004 | 1/BA/47:54, 1/BA/116:121, 1/BA/130:131, 1/BA/148:150, 1/BA/176:178 | No text annotation | homologous J5_5J7L_013 NA | |
| J5_4V9C_005 | 1/BA/531:533, 1/BA/560:564, 1/BA/577:579, 1/BA/1261:1262, 1/BA/2017:2018 | No text annotation | homologous J5_5J7L_014 NA | |
| J5_4V9C_006 | 1/BA/584:589, 1/BA/668:671, 1/BA/809:812, 1/BA/1195:1196, 1/BA/1250:1256 | No text annotation | homologous J5_5J7L_015 NA | |
| J5_4V9C_007 | 1/BA/1674:1682, 1/BA/1706:1707, 1/BA/1751:1752, 1/BA/1756:1764, 1/BA/1988:1990 | No text annotation | homologous J5_5J7L_016 NA | |
| J5_4V9C_008 | 1/BA/2057:2064, 1/BA/2446:2453, 1/BA/2500:2506, 1/BA/2583:2588, 1/BA/2606:2611 | No text annotation | ||
| J5_4V9C_018 | 1/BA/2074:2077, 1/BA/2243:2246, 1/BA/2258:2259, 1/BA/2281:2282, 1/BA/2427:2435 | No text annotation | homologous J5_4WF9_007 J5_39529.2 | |
| J5_4V9C_019 | 1/CA/36:39, 1/CA/403:406, 1/CA/436:442, 1/CA/492:500, 1/CA/545:548 | No text annotation | homologous J5_5J7L_002 NA | |
| J5_4V9C_020 | 1/CA/58:61, 1/CA/106:113, 1/CA/314:316, 1/CA/337:339, 1/CA/350:354 | No text annotation | homologous J5_5J7L_003 NA | |
| J5_4V9C_012 | 1/DA/47:54, 1/DA/116:121, 1/DA/130:131, 1/DA/148:150, 1/DA/176:178 | No text annotation | homologous J5_5J7L_013 NA | |
| J5_4V9C_013 | 1/DA/531:533, 1/DA/560:564, 1/DA/577:579, 1/DA/1261:1262, 1/DA/2017:2018 | No text annotation | homologous J5_5J7L_014 NA | |
| J5_4V9C_014 | 1/DA/584:589, 1/DA/668:671, 1/DA/809:812, 1/DA/1195:1196, 1/DA/1250:1256 | No text annotation | homologous J5_5J7L_015 NA | |
| J5_4V9C_015 | 1/DA/1674:1682, 1/DA/1706:1707, 1/DA/1751:1752, 1/DA/1756:1764, 1/DA/1988:1990 | No text annotation | homologous J5_5J7L_016 NA | |
| J5_4V9C_016 | 1/DA/2057:2064, 1/DA/2446:2453, 1/DA/2500:2506, 1/DA/2583:2588, 1/DA/2606:2611 | No text annotation | ||
| J5_4V9C_021 | 1/DA/2074:2077, 1/DA/2243:2246, 1/DA/2258:2259, 1/DA/2281:2282, 1/DA/2427:2435 | No text annotation | homologous J5_4WF9_007 J5_39529.2 | |
| J6_4V9C_005 | 1/BA/45:46, 1/BA/179:183, 1/BA/214:224, 1/BA/231:235, 1/BA/262:266, 1/BA/426:433 | No text annotation | ||
| J6_4V9C_006 | 1/BA/2074:2077, 1/BA/2243:2246, 1/BA/2258:2259, 1/BA/2281:2284, 1/BA/2384:2395, 1/BA/2421:2435 | No text annotation | ||
| J6_4V9C_002 | 1/BA/2074:2077, 1/BA/2243:2246, 1/BA/2258:2260, 1/BA/2280:2284, 1/BA/2384:2395, 1/BA/2421:2435 | No text annotation | ||
| J6_4V9C_003 | 1/DA/45:46, 1/DA/179:183, 1/DA/214:224, 1/DA/231:235, 1/DA/262:266, 1/DA/426:433 | No text annotation | ||
| J6_4V9C_007 | 1/DA/2074:2077, 1/DA/2243:2246, 1/DA/2258:2259, 1/DA/2281:2284, 1/DA/2384:2395, 1/DA/2421:2435 | No text annotation | ||
| J6_4V9C_004 | 1/DA/2074:2077, 1/DA/2243:2246, 1/DA/2258:2260, 1/DA/2280:2284, 1/DA/2384:2395, 1/DA/2421:2435 | No text annotation | ||
| J7_4V9C_001 | 1/BA/8:15, 1/BA/525:531, 1/BA/2018:2023, 1/BA/2040:2043, 1/BA/2625:2630, 1/BA/2788:2789, 1/BA/2894:2895 | No text annotation | ||
| J7_4V9C_002 | 1/BA/817:822, 1/BA/835:837, 1/BA/942:946, 1/BA/971:976, 1/BA/987:991, 1/BA/1163:1164, 1/BA/1185:1190 | No text annotation | ||
| J7_4V9C_003 | 1/DA/8:15, 1/DA/525:531, 1/DA/2018:2023, 1/DA/2040:2043, 1/DA/2625:2630, 1/DA/2788:2789, 1/DA/2894:2895 | No text annotation | ||
| J7_4V9C_004 | 1/DA/817:822, 1/DA/835:837, 1/DA/942:946, 1/DA/971:976, 1/DA/987:991, 1/DA/1163:1164, 1/DA/1185:1190 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V9C_038 | No text annotation | ||
| J3_4V9C_041 | No text annotation | ||
| J3_4V9C_042 | No text annotation | ||
| J3_4V9C_044 | No text annotation | ||
| J3_4V9C_046 | No text annotation | ||
| J3_4V9C_011 | No text annotation | ||
| J3_4V9C_013 | No text annotation | ||
| J3_4V9C_053 | No text annotation | ||
| J3_4V9C_054 | No text annotation | ||
| J3_4V9C_015 | No text annotation | ||
| J3_4V9C_057 | No text annotation | ||
| J3_4V9C_060 | No text annotation | ||
| J3_4V9C_062 | No text annotation | ||
| J3_4V9C_063 | No text annotation | ||
| J3_4V9C_022 | No text annotation | ||
| J3_4V9C_064 | No text annotation | ||
| J3_4V9C_026 | No text annotation | ||
| J3_4V9C_066 | No text annotation | ||
| J3_4V9C_074 | No text annotation | ||
| J4_4V9C_016 | No text annotation | ||
| J5_4V9C_009 | No text annotation | ||
| J5_4V9C_010 | No text annotation | ||
| J5_4V9C_011 | No text annotation | ||
| J5_4V9C_017 | No text annotation | ||
| J6_4V9C_001 | No text annotation |
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