HL_4V9C_095

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUGAAGUAGG

Length

10 nucleotides

Bulged bases

4V9C|1|BA|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9C_095 not in the Motif Atlas

Geometric match to HL_5J7L_151

Geometric discrepancy: 0.3454

The information below is about HL_5J7L_151

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

3

Unit IDs

4V9C|1|BA|C|2527
4V9C|1|BA|U|2528
4V9C|1|BA|G|2529
4V9C|1|BA|A|2530
4V9C|1|BA|A|2531
4V9C|1|BA|G|2532
4V9C|1|BA|U|2533
4V9C|1|BA|A|2534
4V9C|1|BA|G|2535
4V9C|1|BA|G|2536

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L36

Chain BG

50S ribosomal protein L6