HL_4V9C_117

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

4V9C|1|CA|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9C_117 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.366

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4V9C|1|CA|G|462
4V9C|1|CA|U|463
4V9C|1|CA|U|464
4V9C|1|CA|A|465
4V9C|1|CA|A|466
4V9C|1|CA|U|467
4V9C|1|CA|A|468
4V9C|1|CA|C|469
4V9C|1|CA|C|470

Current chains

Chain CA

16S ribosomal RNA

Nearby chains