HL_4V9C_188

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

4V9C|1|DA|A|2030, 4V9C|1|DA|A|2031, 4V9C|1|DA|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9C_188 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.1073

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

4V9C|1|DA|G|2027
4V9C|1|DA|U|2028
4V9C|1|DA|G|2029
4V9C|1|DA|A|2030
4V9C|1|DA|A|2031
4V9C|1|DA|G|2032
4V9C|1|DA|A|2033
4V9C|1|DA|U|2034
4V9C|1|DA|G|2035
4V9C|1|DA|C|2036

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D0

50S ribosomal protein L32

Chain DD

50S ribosomal protein L3

Chain DR

50S ribosomal protein L21