HL_4V9C_230

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGAGGCUUUGAAGUGUGGACGCCAGUCUGCAUGGAGCCGACCUUGAAAUAC

Length

51 nucleotides

Bulged bases

4V9C|1|DA|U|2132, 4V9C|1|DA|A|2135, 4V9C|1|DA|C|2145, 4V9C|1|DA|C|2146, 4V9C|1|DA|A|2158, 4V9C|1|DA|C|2164, 4V9C|1|DA|C|2165, 4V9C|1|DA|G|2168, 4V9C|1|DA|A|2169, 4V9C|1|DA|A|2170, 4V9C|1|DA|A|2171, 4V9C|1|DA|U|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9C|1|DA|G|2124
4V9C|1|DA|G|2125
4V9C|1|DA|A|2126
4V9C|1|DA|G|2127
4V9C|1|DA|G|2128
4V9C|1|DA|C|2129
4V9C|1|DA|U|2130
4V9C|1|DA|U|2131
4V9C|1|DA|U|2132
4V9C|1|DA|G|2133
4V9C|1|DA|A|2134
4V9C|1|DA|A|2135
4V9C|1|DA|G|2136
4V9C|1|DA|U|2137
4V9C|1|DA|G|2138
4V9C|1|DA|U|2139
4V9C|1|DA|G|2140
4V9C|1|DA|G|2141
4V9C|1|DA|A|2142
4V9C|1|DA|C|2143
4V9C|1|DA|G|2144
4V9C|1|DA|C|2145
4V9C|1|DA|C|2146
4V9C|1|DA|A|2147
4V9C|1|DA|G|2148
4V9C|1|DA|U|2149
4V9C|1|DA|C|2150
4V9C|1|DA|U|2151
4V9C|1|DA|G|2152
4V9C|1|DA|C|2153
4V9C|1|DA|A|2154
4V9C|1|DA|U|2155
4V9C|1|DA|G|2156
4V9C|1|DA|G|2157
4V9C|1|DA|A|2158
4V9C|1|DA|G|2159
4V9C|1|DA|C|2160
4V9C|1|DA|C|2161
4V9C|1|DA|G|2162
4V9C|1|DA|A|2163
4V9C|1|DA|C|2164
4V9C|1|DA|C|2165
4V9C|1|DA|U|2166
4V9C|1|DA|U|2167
4V9C|1|DA|G|2168
4V9C|1|DA|A|2169
4V9C|1|DA|A|2170
4V9C|1|DA|A|2171
4V9C|1|DA|U|2172
4V9C|1|DA|A|2173
4V9C|1|DA|C|2174

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain CG

30S ribosomal protein S7

Chain CK

30S ribosomal protein S11