HL_4V9D_033

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAGUCGGUAG

Length

10 nucleotides

Bulged bases

4V9D|1|AV|U|16, 4V9D|1|AV|C|17, 4V9D|1|AV|G|18, 4V9D|1|AV|G|19, 4V9D|1|AV|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9D_033 not in the Motif Atlas

Homologous match to HL_6PMO_003

Geometric discrepancy: 0.185

The information below is about HL_6PMO_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9D|1|AV|C|13
4V9D|1|AV|A|14
4V9D|1|AV|G|15
4V9D|1|AV|U|16
4V9D|1|AV|C|17
4V9D|1|AV|G|18
4V9D|1|AV|G|19
4V9D|1|AV|U|20
4V9D|1|AV|A|21
4V9D|1|AV|G|22

Current chains

Chain AV

phenylalanine specific transfer RNA

Nearby chains

Chain CA

Large subunit ribosomal RNA; LSU rRNA