HL_4V9D_041

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

4V9D|1|BA|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9D_041 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.097

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4V9D|1|BA|G|259
4V9D|1|BA|G|260
4V9D|1|BA|U|261
4V9D|1|BA|A|262
4V9D|1|BA|A|263
4V9D|1|BA|C|264
4V9D|1|BA|G|265
4V9D|1|BA|G|266
4V9D|1|BA|C|267

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BQ

30S ribosomal protein S17

Chain BT

30S ribosomal protein S20