HL_4V9D_043

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

4V9D|1|BA|C|330, 4V9D|1|BA|G|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9D_043 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.1021

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V9D|1|BA|A|320
4V9D|1|BA|A|321
4V9D|1|BA|C|322
4V9D|1|BA|U|323
4V9D|1|BA|G|324
4V9D|1|BA|A|325
4V9D|1|BA|G|326
4V9D|1|BA|A|327
4V9D|1|BA|C|328
4V9D|1|BA|A|329
4V9D|1|BA|C|330
4V9D|1|BA|G|331
4V9D|1|BA|G|332
4V9D|1|BA|U|333

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BP

30S ribosomal protein S16

Chain BT

30S ribosomal protein S20